Locus 7433

Sequence ID dm3.chr3L
Location 14,826,521 – 14,826,617
Length 96
Max. P 0.963137
window10238 window10239

overview

Window 8

Location 14,826,521 – 14,826,617
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 94.38
Shannon entropy 0.10143
G+C content 0.44583
Mean single sequence MFE -22.60
Consensus MFE -18.80
Energy contribution -19.60
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.509437
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14826521 96 + 24543557
CCUCGUACAGCUAUUUCAAUGCUACUCGAACUGCCACCCAAAAUUGGUGGAUUCCCUCCCAUUAAAUUACAUGACGAUGGCAUUUCGAGUAUUUGG
................(((...((((((((.(((((.......(((((((........)))))))....(.....).))))).)))))))).))). ( -22.80, z-score =  -2.16, R)
>droYak2.chr3L 14909465 96 + 24197627
CCUUGUAGAGCAAUUUCAAUGCUCCUCGAACUGCCACCCAAAAUUGGUGGAUUCCCUCCCAUUAAAUUACAUGACGAUGGCAUUUCGAGUAUUUGG
((..((((((((.......)))))((((((.(((((.......(((((((........)))))))....(.....).))))).)))))))))..)) ( -26.20, z-score =  -2.79, R)
>droEre2.scaffold_4784 14786240 96 + 25762168
CCUUGUAGAGCCAUUUCAAUGCUACUCGAACCGCCACCCGAAAUUGGUGGAUUCCCUCCCAUUAAAUUACAUGACGAUGGCAUUUCGAGUAUUUGG
................(((...((((((((((((((........))))))........(((((............)))))...)))))))).))). ( -21.20, z-score =  -1.01, R)
>droSec1.super_0 6940207 96 + 21120651
CCUCGUACAGCUAUAUCAAUGCUACUCGAACUGCCACCCAAAAUUGGUGGAUUCCCUCCCAUUAAAUUAGAUGACGAUGGCAUUUCGAGUAUUUGG
................(((...((((((((.(((((.........((.((....)).))((((......))))....))))).)))))))).))). ( -24.20, z-score =  -2.33, R)
>droAna3.scaffold_13337 19008608 96 - 23293914
CCUCGUAGAGCUAUUUCAAUGCUACUCGAACUGCCACCCCGAAUUGGUGGAUUCCCUCCCAUUAAAUUACAUGACGAUGGCAUUUCAAGCAUUUGG
.........(((.....(((((((.(((.....(((((.......))))).........(((........))).))))))))))...)))...... ( -18.60, z-score =  -0.29, R)
>consensus
CCUCGUAGAGCUAUUUCAAUGCUACUCGAACUGCCACCCAAAAUUGGUGGAUUCCCUCCCAUUAAAUUACAUGACGAUGGCAUUUCGAGUAUUUGG
................(((...((((((((.(((((.........((.((....)).))(((........)))....))))).)))))))).))). (-18.80 = -19.60 +   0.80)

alignment

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secondary structure

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dotplot

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Window 9

Location 14,826,521 – 14,826,617
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.38
Shannon entropy 0.10143
G+C content 0.44583
Mean single sequence MFE -28.24
Consensus MFE -26.94
Energy contribution -26.70
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -2.04
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.72
SVM RNA-class probability 0.963137
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14826521 96 - 24543557
CCAAAUACUCGAAAUGCCAUCGUCAUGUAAUUUAAUGGGAGGGAAUCCACCAAUUUUGGGUGGCAGUUCGAGUAGCAUUGAAAUAGCUGUACGAGG
.(((.((((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))))...)))................ ( -28.20, z-score =  -2.26, R)
>droYak2.chr3L 14909465 96 - 24197627
CCAAAUACUCGAAAUGCCAUCGUCAUGUAAUUUAAUGGGAGGGAAUCCACCAAUUUUGGGUGGCAGUUCGAGGAGCAUUGAAAUUGCUCUACAAGG
((.....((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))(((((.......))))).....)) ( -32.10, z-score =  -3.32, R)
>droEre2.scaffold_4784 14786240 96 - 25762168
CCAAAUACUCGAAAUGCCAUCGUCAUGUAAUUUAAUGGGAGGGAAUCCACCAAUUUCGGGUGGCGGUUCGAGUAGCAUUGAAAUGGCUCUACAAGG
.(((.((((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))))...)))................ ( -27.50, z-score =  -1.65, R)
>droSec1.super_0 6940207 96 - 21120651
CCAAAUACUCGAAAUGCCAUCGUCAUCUAAUUUAAUGGGAGGGAAUCCACCAAUUUUGGGUGGCAGUUCGAGUAGCAUUGAUAUAGCUGUACGAGG
.(((.((((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))))...)))................ ( -27.00, z-score =  -1.83, R)
>droAna3.scaffold_13337 19008608 96 + 23293914
CCAAAUGCUUGAAAUGCCAUCGUCAUGUAAUUUAAUGGGAGGGAAUCCACCAAUUCGGGGUGGCAGUUCGAGUAGCAUUGAAAUAGCUCUACGAGG
.(((.((((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))))...)))......(((...))). ( -26.40, z-score =  -1.13, R)
>consensus
CCAAAUACUCGAAAUGCCAUCGUCAUGUAAUUUAAUGGGAGGGAAUCCACCAAUUUUGGGUGGCAGUUCGAGUAGCAUUGAAAUAGCUCUACGAGG
.(((.((((((((.(((((((..(((........)))((.((....)).)).......))))))).))))))))...)))................ (-26.94 = -26.70 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:52 2011