| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,817,298 – 14,817,376 |
| Length | 78 |
| Max. P | 0.963742 |
| Location | 14,817,298 – 14,817,376 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 91.53 |
| Shannon entropy | 0.14973 |
| G+C content | 0.46394 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -19.72 |
| Energy contribution | -19.28 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14817298 78 - 24543557 CGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACCGUGCAAAAAC .(((....))).............(((((....)))))(((....((((((((((.....)))))))))))))..... ( -26.70, z-score = -3.57, R) >droEre2.scaffold_4784 14784645 77 - 25762168 CGUAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCUAGAACGGUGGGUGGGUUUCGUGCACUGGGCAAAAU- .(((((((((((...(........(((((....))))).(((.....))))..)))))))).)))............- ( -18.50, z-score = -0.94, R) >droYak2.chr3L 14907885 77 - 24197627 AGGAGAGAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUUGUGCACUGCGGAAAAU- .(((....)))............(((((.((((((..((((.......))).)..)))))).....)))))......- ( -17.50, z-score = -0.18, R) >droSec1.super_0 6938683 78 - 21120651 CGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACUGUAAAAAAAC .(((....)))............(((((.........)))))...((((((((((.....))))))))))........ ( -23.50, z-score = -3.52, R) >droSim1.chr3L 14140064 78 - 22553184 CGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACCGUGCAAAAAC .(((....))).............(((((....)))))(((....((((((((((.....)))))))))))))..... ( -26.70, z-score = -3.57, R) >consensus CGGAGAAAUCCAAGACAAAUCAACGCAGAAAAAUCUGCUGCGAGAACGGUGUGUGGGUUUCAUGCACUGUGCAAAAAC .(((....))).............(((((....)))))........(((((..((.....))..)))))......... (-19.72 = -19.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:45 2011