| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,249,883 – 5,249,984 |
| Length | 101 |
| Max. P | 0.934744 |
| Location | 5,249,883 – 5,249,984 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.47243 |
| G+C content | 0.44792 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.65 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5249883 101 + 23011544 CAGGCCGUUGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAUUGUAGCUAUUGUAGUCAACAAAUGGUUGUGUUUUCAAAAAGAGCAC------------ ...(((.((((....))))((((((((((((..(((((......))))).....((((.((((...))))..))))..)))))))))))).....).))..------------ ( -35.50, z-score = -3.58, R) >droSec1.super_5 3330131 101 + 5866729 CAGGCCGUUGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCCGAAAUUGUAGCUACUGUUGUCAACAAAUGUUUAUAUUUUCAACAAGAGCAU------------ ..(.((.((((....))))))...)((((..(((((((......)))))))...)))).(((..(((((.....(((((....))))).)))))..)))..------------ ( -28.70, z-score = -1.65, R) >droYak2.chr2L 8375722 113 - 22324452 CAGUCCGUUGGGAAACCAAGGAGACACAGCCUGGUCAGGAUGCACUGGCAGAAAAGCUUGCUUUUGAAAGAGUAUAAACUUAGUAGCAGAAACAUUAAUUUCAAGGUAGAUAA ..((((.((((....)))).).)))...((((.(((((......))))).((((....((.(((((...((((....)))).....))))).))....)))).))))...... ( -30.90, z-score = -2.16, R) >droEre2.scaffold_4929 5328269 99 + 26641161 -CGGCCGUUGGGAAACCAAGGAGACACAACCCGGUCAAGAUGCACUGGCAGAAAAACUA-UUGAUGUAGCUAACACUUGGUAAUACCUUCCAAGGGAGUAU------------ -.(((((((((....))))(....)......)))))....(((....))).........-........(((....(((((.........)))))..)))..------------ ( -25.30, z-score = -0.67, R) >consensus CAGGCCGUUGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAAUCUAGCUAUUGUAGUCAACAAAUGGUAAUAUCUUCAAAAAGAGCAU____________ ..(((((((((....))))(....)......))))).((.((((.((((..........)))).)))).)).......................................... (-15.77 = -16.65 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:28 2011