| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,816,644 – 14,816,744 |
| Length | 100 |
| Max. P | 0.758181 |
| Location | 14,816,644 – 14,816,744 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 97.74 |
| Shannon entropy | 0.04208 |
| G+C content | 0.55241 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -29.67 |
| Energy contribution | -29.45 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.01 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14816644 100 + 24543557 CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC-UGCCUGGCCAGUUAUUCGCUCAGG .............((((....((((((...(((((((.......))))))).......))))))...((((((...-....)))))).......))))... ( -29.10, z-score = -0.89, R) >droSim1.chr3L 14139394 100 + 22553184 CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC-UGCCCGGCCAGUUAUUCGCUCAGG .............((((....((((((...(((((((.......))))))).......))))))...((((((...-....)))))).......))))... ( -31.10, z-score = -1.62, R) >droSec1.super_0 6938029 100 + 21120651 CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC-UGCCCGGCCAGUUAUUCGCUCAGG .............((((....((((((...(((((((.......))))))).......))))))...((((((...-....)))))).......))))... ( -31.10, z-score = -1.62, R) >droYak2.chr3L 14907216 100 + 24197627 CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC-UGCCUGGCCAGUUAUUCGCUCAUG .............((((....((((((...(((((((.......))))))).......))))))...((((((...-....)))))).......))))... ( -29.10, z-score = -1.30, R) >droEre2.scaffold_4784 14783978 100 + 25762168 CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC-UGCCUGGCCAGUUAUUCGCUCAGG .............((((....((((((...(((((((.......))))))).......))))))...((((((...-....)))))).......))))... ( -29.10, z-score = -0.89, R) >droAna3.scaffold_13337 19006704 101 - 23293914 CCGUAAAUCCGCAGAGCCGCCGAGGCUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCAGAUCCUGCUCGGCCAGUUAUUCGCUCAGG .............((((.(((((((((...(((((((.......))))))).......))))))....(((((...))))).)))..(.....)))))... ( -26.60, z-score = 0.25, R) >consensus CCGUAAAUCCGCAGAGCCGCCGAGACUAUUACGUGGUUAAACGCACCAUGUCCACAUAGGUCUCAGAUGGCCGAUC_UGCCCGGCCAGUUAUUCGCUCAGG .............((((....((((((...(((((((.......))))))).......))))))...((((((........)))))).......))))... (-29.67 = -29.45 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:44 2011