| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,813,924 – 14,814,035 |
| Length | 111 |
| Max. P | 0.657387 |
| Location | 14,813,924 – 14,814,035 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.46261 |
| G+C content | 0.41908 |
| Mean single sequence MFE | -31.31 |
| Consensus MFE | -10.33 |
| Energy contribution | -10.41 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14813924 111 + 24543557 CAAAUAGAGAUUCUGGACGUAAAGCACUGAAAACAAGAGGGAUAAUUGCAACGUUUUGUGACUUCGACAUGUG-------UAAGCCAAAGGGCUUACAAACAUGUUG--GGGGAUUUGAA (((((.....(((.(..(.....)..).))).((((((.(...........).))))))..((((((((((((-------((((((....)))))))..))))))))--))).))))).. ( -31.00, z-score = -3.13, R) >droPer1.super_12 814227 113 - 2414086 CAAAAGGAGAGAGGGGAUACAAAG----GGGUACGGUAUUGAUAAUUGCAUCUUUUCAUUGCUCCAACAUGUGAGUAAAGCAAGCCAGAGGGCUUACAAACUUGUUGUUGGGGACUC--- ......(((.((((((((.....(----.....).(((........)))))))))))....((((((((.(..(((...(.(((((....))))).)..)))..))))))))).)))--- ( -28.80, z-score = -1.07, R) >dp4.chrXR_group6 12393952 113 - 13314419 CAAAAGGAGAGAGGGGAUACAAAG----AGGUACGAUAUUGAUAAUUGCAUCUUUUCAUUGCUCCAACAUGUGUGUACAGCAAGCCAGAGGGCUUACAAACUUGUUGUUGGGGACUC--- ......(((.((((((((.(((..----.((((...)))).....))).))))))))....((((((((.((.((((.....((((....)))))))).))....)))))))).)))--- ( -26.90, z-score = -0.38, R) >droAna3.scaffold_13337 19004187 109 - 23293914 CAAAUGGGGCUUUCAAAUCGAAUUCCUCCGGAAAGGGAUGGAUAAUUGCUGCGGUUUAUGGCUCCGACAUGUG-------UAAGCCAAAGGGCUUACAAAGUUGUUG--GGUAUUUUC-- .....((((((...((((((...((((((......))).))).........))))))..))))))((((..((-------((((((....))))))))....)))).--.........-- ( -34.10, z-score = -2.08, R) >droEre2.scaffold_4784 14781319 111 + 25762168 CAAAUAGAAAUACUGGACGUAAAACCCCCAAAACAAGAGGGAUAAUUGCAACGUUUUGCGACUUCGACAUGUG-------UAAGCCAAAGGGCUUACAAACUUGUUG--GGGGAUUUGAA (((((.....(((.....)))...((((((..(((((...((...((((((....))))))..))......((-------((((((....))))))))..)))))))--))))))))).. ( -35.80, z-score = -4.05, R) >droYak2.chr3L 14902770 111 + 24197627 CAAAUAGAGAUACUGGACGUAAAACCCUGAACACAAGAGGGAUAAUUGCAACGUUUUGUGACUUCGACAUGUG-------UAAGCCAAAGGGCUUACAAACUUGUUG--GGGGAUUUCAA ......(((((((.....)))...((((...(((((((.(...........).)))))))....(((((..((-------((((((....))))))))....)))))--)))).)))).. ( -32.70, z-score = -3.01, R) >droSec1.super_0 6935292 111 + 21120651 CAAAUAGAGAUUCUGGACGUAAAACCAUGAAAACAAGAGGGAUAAUUGCAACGUUUUGUGACUUCGACAUGUG-------UAAGCCAAAGGGCUUACAAACUUGUUG--GGGGAUUUGAA (((((.....((((((........))).))).((((((.(...........).))))))..((((((((..((-------((((((....))))))))....)))))--))).))))).. ( -30.60, z-score = -2.97, R) >droSim1.chr3L 14136619 111 + 22553184 CAAAUAGAGAUUCUGGACGUAAAACCAUGAAAACAAGAGGGAUAAUUGCAACGUUUUGUGACUUCGACAUGUG-------UAAGCCAAAGGGCUUACAAACUUGUUG--GGGGAUUUGAA (((((.....((((((........))).))).((((((.(...........).))))))..((((((((..((-------((((((....))))))))....)))))--))).))))).. ( -30.60, z-score = -2.97, R) >consensus CAAAUAGAGAUACUGGACGUAAAACCCUGAAAACAAGAGGGAUAAUUGCAACGUUUUGUGACUUCGACAUGUG_______UAAGCCAAAGGGCUUACAAACUUGUUG__GGGGAUUUGAA .............................................................((((((((.((........((((((....))))))...)).)))))..)))........ (-10.33 = -10.41 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:43 2011