| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,811,872 – 14,811,992 |
| Length | 120 |
| Max. P | 0.655926 |
| Location | 14,811,872 – 14,811,992 |
|---|---|
| Length | 120 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.79 |
| Shannon entropy | 0.22513 |
| G+C content | 0.43789 |
| Mean single sequence MFE | -32.11 |
| Consensus MFE | -26.96 |
| Energy contribution | -28.10 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14811872 120 - 24543557 GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGGUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUUGCUCACAAACAUAUG (((.....(((..(((((.(((.((((((((.(((....))))))))))).((((......))))((....))..........)))..)))))..)))......)))............. ( -35.00, z-score = -2.42, R) >droSim1.chr3L 14134438 120 - 22553184 GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGGUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCAGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUUGCUUACAAACAUAUG (((.....(((..(((((.(((.((((((((.(((....)))))))))))..(((......))).((....))..........)))..)))))..)))......)))............. ( -34.50, z-score = -2.30, R) >droSec1.super_0 6933099 120 - 21120651 GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGGUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCAGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUUGCUUACAAACAUAUG (((.....(((..(((((.(((.((((((((.(((....)))))))))))..(((......))).((....))..........)))..)))))..)))......)))............. ( -34.50, z-score = -2.30, R) >droYak2.chr3L 14900747 120 - 24197627 GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGUUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUUGCUCACAAACAUAUG (((.....(((..(((((.(((.((((((((.((.....)).)))))))).((((......))))((....))..........)))..)))))..)))......)))............. ( -31.70, z-score = -1.85, R) >droEre2.scaffold_4784 14778931 120 - 25762168 GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGGUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUAGCUCACAAACUUAUG ((((....(((..(((((.(((.((((((((.(((....))))))))))).((((......))))((....))..........)))..)))))..)))....)).))............. ( -33.10, z-score = -1.88, R) >dp4.chrXR_group6 12392114 115 + 13314419 GCAUUUUUAUUGAAGUACAGCCAGGCCCAAGUGGUCGUCGCCCUUGUGCUAAGCCCGGGAUGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAC-UUGCACAUGCGAG---- ((((.............((((((..((((((.(((....))))))(.((...)).)))).))))))....((((.((((((.((.......))..)))))).-.)))).))))...---- ( -28.50, z-score = 0.70, R) >droPer1.super_12 812365 115 + 2414086 GCAUUUUUAUUGAAGUACAGCCAGGCCCAAGUGGUCGUCGCCCUUGUGCUAAGCCCGAGAUGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAC-UUGCACAUGCGAG---- ((((.............(((((((((.((((.(((....))))))).)))..........))))))....((((.((((((.((.......))..)))))).-.)))).))))...---- ( -27.50, z-score = 0.22, R) >consensus GCAUUUUUAUUCCAGUUCUGGCAGGCGCAAGUGGUUUUCGCCCUUGUGCUAAGCCAUCUCAGGCUGCAAAUGCAUUAAAUCCAGCCUUGAACUAUGAUUUAUAUUGCUCACAAACAUAUG (((.....(((..(((((.(((.((((((((.(((....)))))))))))..(((......))).((....))..........)))..)))))..)))......)))............. (-26.96 = -28.10 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:43 2011