| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,809,637 – 14,809,723 |
| Length | 86 |
| Max. P | 0.969493 |
| Location | 14,809,637 – 14,809,723 |
|---|---|
| Length | 86 |
| Sequences | 8 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 83.99 |
| Shannon entropy | 0.31631 |
| G+C content | 0.48311 |
| Mean single sequence MFE | -13.73 |
| Consensus MFE | -12.77 |
| Energy contribution | -13.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14809637 86 + 24543557 ----ACCCA-CUUUUCCGCAA---UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ----.....-...........---.................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -2.02, R) >dp4.chrXR_group6 12389685 78 - 13314419 --------------GCCCCCU--CCCAGGCACCAACAUCCAGAAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC --------------(((....--....)))...................(((((..(((..(((....)))...)))..))))).......... ( -13.60, z-score = -0.97, R) >droAna3.scaffold_13337 19000584 94 - 23293914 ACCCACUUUUCUUUUCCACCAGUAUCCGACUCACCCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC .........................................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -1.89, R) >droEre2.scaffold_4784 14776651 86 + 25762168 ----ACCCA-CUUUUCCGCAA---UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ----.....-...........---.................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -2.02, R) >droYak2.chr3L 14898447 87 + 24197627 ----ACCCAACUUUUCCGCAA---UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ----.................---.................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -2.00, R) >droSec1.super_0 6930795 86 + 21120651 ----ACCCA-CUUUUCCGCAA---UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ----.....-...........---.................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -2.02, R) >droSim1.chr3L 14132100 86 + 22553184 ----ACCCA-CUUUUCCGCAA---UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ----.....-...........---.................(((((...(((((..(((..(((....)))...)))..))))).....))))) ( -14.40, z-score = -2.02, R) >droPer1.super_12 809919 67 - 2414086 ---------------------------AGCACCAACAUCCAGAAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC ---------------------------......................(((((..(((..(((....)))...)))..))))).......... ( -9.80, z-score = -0.52, R) >consensus ____ACCCA_CUUUUCCGCAA___UCCAGACCCACCAUCCAGCAUUUUUAAUGGCAGCGAAUACACGCGUAAGACGCGACCAUUUCCAUAAUGC .........................................(((((...(((((..(((..(((....)))...)))..))))).....))))) (-12.77 = -13.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:42 2011