| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,797,851 – 14,797,941 |
| Length | 90 |
| Max. P | 0.827438 |
| Location | 14,797,851 – 14,797,941 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 84.34 |
| Shannon entropy | 0.28165 |
| G+C content | 0.46561 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -18.93 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14797851 90 - 24543557 GGGGGGGUGGGGGGUUUGC-AAAGCUUCGGCAUUGCCGACUGCGCAAAGACAAUAAUUCCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA ((....(((((.((((.((-((.((....)).)))).)))).)((((..((((((......))))))..))))))))......))...... ( -32.50, z-score = -2.01, R) >droAna3.scaffold_13337 18989252 80 + 23293914 -----------GUGGAGACCAAAGCUUCGGCAUUGCCGAAUGCGCAAAGACAACAAAAGUUUGUUGUUCUUGGCCAACAAAUACAAAAUAA -----------.(((........((((((((...)))))).)).(((..(((((((....)))))))..))).)))............... ( -22.70, z-score = -2.45, R) >droSim1.chr3L_random 713000 79 - 1049610 ------------GGGGGUCCAAAGCUUCGGCAUUGCCGACUGCGCAAAGACAAUAAUUCCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA ------------((...((....((.(((((...)))))..))((((..((((((......))))))..))))....))....))...... ( -21.90, z-score = -1.60, R) >droSec1.super_0 6919089 80 - 21120651 -----------GGGGGGUCCAAAGCUUCGGCAUUGCCGACUGCGCAAAGACAAUAAUUCCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA -----------(((.(((((((.((....)).)))..)))).)((((..((((((......))))))..))))..........))...... ( -23.50, z-score = -1.65, R) >droYak2.chr3L 14886575 81 - 24197627 ----------GGGGCUAGCUAAAGCUUCGGCAUUGCCGACUGCGCAAACACAAUAAUUCCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA ----------.((((.((.....((.(((((...)))))..))......((((((......)))))).)).))))................ ( -20.00, z-score = -1.18, R) >droEre2.scaffold_4784 14765336 79 - 25762168 ------------GGGGGGCCAAAGCUUCGGCAUUGCCGACCGCGCAAACACAAUAAUUUCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA ------------((..(((.((.((....)).)))))..))(.((((..((((((......))))))..)))).)................ ( -21.10, z-score = -0.89, R) >consensus ___________GGGGGGGCCAAAGCUUCGGCAUUGCCGACUGCGCAAAGACAAUAAUUCCAUGUUGUUCUUGCCCACGAAAAACCAAAUAA ............((.........((.(((((...)))))..))((((..((((((......))))))..))))..........))...... (-18.93 = -18.68 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:40 2011