| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,777,469 – 14,777,563 |
| Length | 94 |
| Max. P | 0.824811 |
| Location | 14,777,469 – 14,777,563 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.58 |
| Shannon entropy | 0.46306 |
| G+C content | 0.42344 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -17.14 |
| Energy contribution | -19.03 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14777469 94 + 24543557 GCAAAGUCAAUGGAAAUUGAGCAUGUUAAGCCCCUAGGGGUGAUGAUCAUCUAUCAUCUCCAUUGGCACA----------------UUAUUGAUUAU--UUUAAUGAUCGAA .....(((((((((...............((((....))))((((((.....)))))))))))))))...----------------...((((((((--....)))))))). ( -30.10, z-score = -3.20, R) >droSim1.chr3L 14107321 110 + 22553184 GCAAAGUCAGGGGAAAUUGAGCAUGUUAAGCCCCUUGGGGUGAUGAUCAUCUAUCAUCUCCUCUGGGACAAAAGCGAGCGAAAUGCCGAUUGAUUAU--UUUAAUGAUCGAA .....((((((((...((((.....)))).))))).((((.((((((.....)))))).))))...))).....((.((.....)))).((((((((--....)))))))). ( -31.00, z-score = -0.91, R) >droSec1.super_0 6898408 110 + 21120651 GCAAAGUGAGGGGAAAUUGAGCAUAUUAAGCCCCUUGGGAUGAUGAUCAUCUAUCAUCUCCUCUGGGACAAAAGCGAGCGAAAUGCCGAUUGAUUAU--UUUAAUGAUCGAA ((.....((((((...((((.....)))).))))))(((((((((......))))))))).............))(.((.....)))..((((((((--....)))))))). ( -28.50, z-score = -0.69, R) >droYak2.chr3L 14865823 102 + 24197627 -CAAAGUCAGGGGAAAUUGAGCAUGCUAAGUCCCCGGGGGUGAUGUUC-------AUCUCCAUUGGCACAACAGCGAGCGAAAACCCGAUUGAUUAU--UUUAAUGAUCGAA -....(((((((((.....((....))...)))))(((((((.....)-------))))))..))))......................((((((((--....)))))))). ( -29.80, z-score = -1.35, R) >droEre2.scaffold_4784 14744971 101 + 25762168 -CAAAGUCAGGGGAAAUUGAGCAUGUUAAGCCCC-GGGGGUGAUGAUC-------AGCUUCAUUGGCAUAACAGCGAGCGAAAACCCGAUUGAUUAU--UUUAAUGAUCGAA -...((((.(((....(((.((.(((((.(((..-((((.((.....)-------).))))...))).)))))))...)))...)))))))((((((--....))))))... ( -28.50, z-score = -1.55, R) >droAna3.scaffold_13337 18969030 108 - 23293914 UGAACUUCAAUGAAAAGUGAGCCUGCCA-GUCCCCGGGGGUGAUGAUCAAUGAUCAUC-CCACUGGGAAAAUA--AAACAACAAAUCGAUUGAUUAUAUUUUUACGAUCGAG .....((((.(....).)))).......-...(((((.((.(((((((...)))))))-)).)))))......--..........(((((((............))))))). ( -26.50, z-score = -1.25, R) >consensus GCAAAGUCAGGGGAAAUUGAGCAUGUUAAGCCCCUGGGGGUGAUGAUCAUCUAUCAUCUCCACUGGCACAAAAGCGAGCGAAAACCCGAUUGAUUAU__UUUAAUGAUCGAA .....(((((((((...............((((....))))((((((.....)))))))))))))))......................((((((((......)))))))). (-17.14 = -19.03 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:38 2011