| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,776,313 – 14,776,493 |
| Length | 180 |
| Max. P | 0.785052 |
| Location | 14,776,313 – 14,776,493 |
|---|---|
| Length | 180 |
| Sequences | 4 |
| Columns | 188 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Shannon entropy | 0.35868 |
| G+C content | 0.41653 |
| Mean single sequence MFE | -52.72 |
| Consensus MFE | -26.38 |
| Energy contribution | -27.00 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14776313 180 + 24543557 CAUGAAUUGCAUUUCGAAGAGGGAAAUUGCGAUUAUCUGAAGGGGCAAUCCACUUGGCGGUGAAAUGGGAAGAUAUCUGCCAUAUUCAUAAAUAUAUUUCGAUGUAUAUUUAUGGUAUGGUAUAUAUA--------GUGAUAGAGUCGUCAUACGAUACGGCGACAAGUACGCGUGGCGAUCCGCAAA ......((((...(((..((((((..((((..((......))..))))))).)))..))).......(((..((((.((((((((.(((((((((((......))))))))))))))))))).)))).--------.........((((((..((.(((........)))))..))))))))))))). ( -52.00, z-score = -1.81, R) >droEre2.scaffold_4784 14743880 153 + 25762168 CAUGAAUUGCAUUUCCAAGAGGGAAAUUGCGAUUAUCUGAAAUGGCAAUAUAUCUCCUAC----------AUACAUAUGU---AUGUAUAUGUGUAUUUC----------CAUGGCAUGGUUUA------------GUGGUAGAGUCGUCAUGCGAUACGGUGACGAGUUCGCGUGGCGAUCCGCAAA ((((((((((((((((.....))))).))))))).......((((.(((((((....(((----------((((....))---)))))...))))))).)----------)))..)))).....------------((((....((((((((((((..((....))...))))))))))))))))... ( -58.20, z-score = -4.67, R) >droYak2.chr3L 14864692 164 + 24197627 CAUGAAUUGCAUUGCAAAGAGGGAAAUUGCUAUUAUCUGAAGGGGCAUGCCACUUGGCGGUGAAAUGGGAAGAUAUCUGC--UAUUUAUAUAUGUAUUUA----------UAUGCCAUGGUAUA------------GCGGUGGAGUCGUCAUACGAUACGGUGACAAGUUCGCGUGGCGAUCCGCAAA ...........((((..........((((((((.(((......((((((((....)))....((((((..((....)).)--))))).............----------.)))))..))))))------------)))))(((.((((((..(((...(....)....)))..))))))))))))). ( -45.90, z-score = -0.34, R) >droSec1.super_0 6897227 186 + 21120651 CAAGAAUUGCAUUUCGAAGAGGGAAAUUGCGAUUAUCUGAAGGGGCUAGCCACUUGGCGGUGAAAUGGGAAGAUAUCUGC--CAAAUAUAUAUAUAUAUAGAUGUGUAUUUAUGGCAUGGUAUAUAUAGUUAUAUAGUGGUAGAGUCGUCAUACGAUACGGUGACAAGUUCGCGUGGCGAUCCGCAAA (((((((((((((((.......)))).))))))).........((....)).))))((((...............(((((--((.(((((..((((((((..(((((.......))))).))))))))..)))))..)))))))(((((((..(((...(....)....)))..)))))))))))... ( -54.80, z-score = -2.42, R) >consensus CAUGAAUUGCAUUUCGAAGAGGGAAAUUGCGAUUAUCUGAAGGGGCAAGCCACUUGGCGGUGAAAUGGGAAGAUAUCUGC__UAUUUAUAUAUAUAUUUA__________UAUGGCAUGGUAUA____________GUGGUAGAGUCGUCAUACGAUACGGUGACAAGUUCGCGUGGCGAUCCGCAAA (((((((((((((((.......)))).)))))))..(((..(((........)))..))).......................................................)))).................((((....((((((((.(((.((........))))).))))))))))))... (-26.38 = -27.00 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:37 2011