Locus 7420

Sequence ID dm3.chr3L
Location 14,752,065 – 14,752,158
Length 93
Max. P 0.757765
window10220

overview

Window 0

Location 14,752,065 – 14,752,158
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.61
Shannon entropy 0.07391
G+C content 0.50110
Mean single sequence MFE -27.94
Consensus MFE -27.22
Energy contribution -26.50
Covariance contribution -0.72
Combinations/Pair 1.11
Mean z-score -1.24
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.757765
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14752065 93 - 24543557
AUCGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUAUAUGUUUUUACCCCGU-AGGGUCUCGGUCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...))-))))))))).)))).. ( -27.70, z-score =  -0.70, R)
>droEre2.scaffold_4784 14718626 93 - 25762168
AUCGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUUUAUGUUUUUACCCUGU-AGGGUCUCGGUCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....))).....((...-.)))))))).)))).. ( -27.60, z-score =  -1.52, R)
>droYak2.chr3L 14839409 94 - 24197627
AUCGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUUUAUGUUUUUGCCCUGUAAGGGUCUCGGUCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.((((((((((...........))).......))))))).)))).. ( -29.41, z-score =  -1.49, R)
>droSec1.super_0 6873006 93 - 21120651
AUCGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGU-AGGGUCUCGAUCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...))-))))))))).)))).. ( -27.70, z-score =  -1.45, R)
>droSim1.chr3L 14082360 92 - 22553184
AUCGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUGCCCCGU-AGGGUCUCG-UCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...))-)))))))))-)))).. ( -27.30, z-score =  -1.06, R)
>consensus
AUCGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGU_AGGGUCUCGGUCUCUG
...(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....)))......((....)))))))).)))).. (-27.22 = -26.50 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:36 2011