| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,751,474 – 14,751,585 |
| Length | 111 |
| Max. P | 0.816346 |
| Location | 14,751,474 – 14,751,585 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.61 |
| Shannon entropy | 0.53681 |
| G+C content | 0.34960 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -11.66 |
| Energy contribution | -11.98 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816346 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 14751474 111 + 24543557 AACGGGAUCCGUAGGUUCCGGUUCUAUAACUAUCGGAUCCGGUAUCAAAAUAUUCAACAUUUUCUUAUACUACUCCACUCUGAAUAAGCUCAAAUUUUACAGUUUAAAAAU .((.((((((((((...............))).))))))).)).........................................((((((..........))))))..... ( -17.86, z-score = -0.91, R) >droEre2.scaffold_4784 14717997 102 + 25762168 AACGGGAUCCAGAGGUUCCGAUACCAUAACUAUCGGAUCCGGGAUCAAUAUUUCUUCCAGCUUAUUA--UGAUUAUAAUAUUA-UGCAAUAUAUUAUUAUAUAUU------ .....(((((...((.(((((((.......))))))).)).))))).............((.(((((--(....))))))...-.))(((((((....)))))))------ ( -24.70, z-score = -2.13, R) >droYak2.chr3L 14838796 107 + 24197627 AACGGGAUGCAGAGGUUCCGGUUCCAAAACUAUCGGAUCCGGGAUCAACAUUUUUGCCAGCUUAUA---AUUAUUAAGAUUAAAUUAAACAUA-UGGCACAGUUAAAAAUU (((((((((....((((((((.(((.........))).))))))))..))))))(((((.((((..---.....))))...............-)))))..)))....... ( -23.59, z-score = -1.80, R) >droSec1.super_0 6872458 105 + 21120651 AACGGUAUCCGUAGGUUCCGGUUCUAAAACUAUCUGAUCCGGGAUCACAGUGUUCAACAUUUUCUU---CUACUCUACUCUGAAUAGAACCAA-UUUUACAGUUAAAAU-- ...(((....((.((((((((.((...........)).)))))))))).................(---(((.((......)).)))))))..-...............-- ( -21.00, z-score = -1.31, R) >droSim1.chr3L 14081813 104 + 22553184 AACGGGAUCCGUAGGUUUCGGUUCGAAAAAUAUCUGAUCCGGGAUCACAAUAUUCAACAUUU-CUU---CUGCUCUACUCUGAAUAGAACCAA-UUUUACAGUUAAAAU-- ...((.....((.(((..(((.((((......)).)).)))..)))))..............-.((---(((.((......)).)))))))..-...............-- ( -18.20, z-score = -0.09, R) >consensus AACGGGAUCCGUAGGUUCCGGUUCCAAAACUAUCGGAUCCGGGAUCAAAAUAUUCAACAUUUUCUU___CUACUCUACUCUGAAUAAAACCAA_UUUUACAGUUAAAAA__ .............((((((((.(((.........))).))))))))................................................................. (-11.66 = -11.98 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:35 2011