| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,750,891 – 14,750,981 |
| Length | 90 |
| Max. P | 0.964807 |
| Location | 14,750,891 – 14,750,981 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.01 |
| Shannon entropy | 0.03447 |
| G+C content | 0.37253 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14750891 90 - 24543557 AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAAAAAGU- ..................(((((((.((((((.(((....))))))))).))))))).................................- ( -12.90, z-score = -1.76, R) >droSim1.chr3L 14081230 90 - 22553184 AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAAAAAGU- ..................(((((((.((((((.(((....))))))))).))))))).................................- ( -12.90, z-score = -1.76, R) >droSec1.super_0 6871875 90 - 21120651 AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAAAAAGU- ..................(((((((.((((((.(((....))))))))).))))))).................................- ( -12.90, z-score = -1.76, R) >droYak2.chr3L 14838210 91 - 24197627 AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAAAAAAGU ..................(((((((.((((((.(((....))))))))).))))))).................................. ( -12.90, z-score = -2.06, R) >droEre2.scaffold_4784 14717415 90 - 25762168 AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAAAAAGU- ..................(((((((.((((((.(((....))))))))).))))))).................................- ( -12.90, z-score = -2.04, R) >consensus AAAAUCACCCACAGCCACUGAAAUUUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAAAAAGU_ ..................(((((((.((((((.(((....))))))))).))))))).................................. (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:34 2011