| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,723,789 – 14,723,901 |
| Length | 112 |
| Max. P | 0.986230 |
| Location | 14,723,789 – 14,723,901 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.73 |
| Shannon entropy | 0.57630 |
| G+C content | 0.43011 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -13.10 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14723789 112 - 24543557 CAUUUUAAUAAAAAUGCAAAUGUCUCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUAGCUGUCUCUUUCUAUUAUCGCUGUACCCGUUCCGCCCAACUCGUCACUCCUACGA ((((((....))))))...........(((.((((((((...(((((((....)))))))....)))))).....((.......)).)).)))....((((.......)))) ( -22.80, z-score = -1.78, R) >droEre2.scaffold_4784 14690390 98 - 25762168 CAUUUUAAUAAAAAUGCAAAUGUCUCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUGGUUGUCUCUUUCUAUUAUCGCUAUACCCGUCACUACCACCA-------------- ((((((....))))))...(((..(.((((.((((((((...(((((((....)))))))....))))))....)))))).)..)))...........-------------- ( -18.90, z-score = -1.29, R) >droYak2.chr3L 14810652 96 - 24197627 CAUUUUAAUAAAAAUGCAAAUGUCUCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUAGCUGUCUCUUUCUAUUAUCGCU--ACCCGUCACUACCACGA-------------- ((((((....))))))..........((((.((((((((...(((((((....)))))))....))))))....)))))--)..(((.......))).-------------- ( -21.50, z-score = -2.13, R) >droSim1.chr3L 14052497 112 - 22553184 CAUUUUAAUAAAAAUGCAAAUGUCUCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUAGCUGUCUCUUUCUAUUAUCGCUGUACCCGUCCCGCCCAAGCCGUCACUCCCACGA ((((((....))))))...........((((..((((((...(((((((....)))))))....))))))......((.(........).))...))))............. ( -24.70, z-score = -2.20, R) >droSec1.super_0 6844818 112 - 21120651 CAUUUUAAUAAAAAUGCAAAUGUCGCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUAGCUGUCUCUUUCUAUUAUCGCUGUACUCUUCCCGCCCAAGCCGUCACUCCCACGA ((((((....)))))).....((.((.((((..((((((...(((((((....)))))))....))))))......((.(........).))...)))))).))........ ( -25.80, z-score = -2.06, R) >droAna3.scaffold_13337 18915114 110 + 23293914 CAUUUUAAUAAAAAUGCAAAUGUCGCUGGCGGAAGAAAGUCAAGCCAG--UCAUCGGACUGUCUCUUUCUAUUAUCGCUCUACCCAUCUCUGUUGCUCUCGGUUGCGAAUUC ((((((....))))))......((((.(((.((((((((...((.(((--((....))))).))))))))......((...((........)).))..)).))))))).... ( -21.90, z-score = -0.30, R) >droVir3.scaffold_13049 16819194 92 - 25233164 CAUUUUAAUAAAAAUGCAAAUGUCUGUUCCUCAAAGUGAAGGAAUGACGCUUUCUUUACUGUUUCCUUCCGCAUUUCCUGCCCCUUUCCCCC-------------------- ...........((((((.......((.....)).((((((((((......))))))))))..........))))))................-------------------- ( -12.80, z-score = -1.39, R) >consensus CAUUUUAAUAAAAAUGCAAAUGUCUCUGGCUGAAGAAAGUCAAGCUAGCAUCAGCUAGCUGUCUCUUUCUAUUAUCGCUGUACCCGUCCCGCCCAAGC_______C__A___ ((((((....)))))).................((((((...(((((((....)))))))....)))))).......................................... (-13.10 = -13.00 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:32 2011