| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,714,149 – 14,714,211 |
| Length | 62 |
| Max. P | 0.992411 |
| Location | 14,714,149 – 14,714,211 |
|---|---|
| Length | 62 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 64.83 |
| Shannon entropy | 0.71076 |
| G+C content | 0.48387 |
| Mean single sequence MFE | -10.23 |
| Consensus MFE | -6.11 |
| Energy contribution | -5.83 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14714149 62 + 24543557 AUAAGUACGCCGCCAAGUCUGAGCCCGAAUGAAGCAAUUCCAAUGAGUUGCAGCCUCCCAAU- ........((.((((....)).)).........(((((((....))))))).))........- ( -9.80, z-score = -0.87, R) >droPer1.super_12 706087 54 - 2414086 ----ACACA-CAUUUCACCCCACGGCAACGGUACUCGCUUCCAUAGGGUCGAUAAUAGA---- ----.....-....((((((..((....))((....)).......)))).)).......---- ( -8.10, z-score = 0.02, R) >dp4.Unknown_group_559 9230 62 + 10017 AUAAGUGCAUCAAUAUGUGUCUCCUAGAAAGUACCUUCCCCGAUAGG-UGGAAGACACAGAAG ...............(((((((((........((((........)))-))).))))))).... ( -13.20, z-score = -1.38, R) >droEre2.scaffold_4784 14685500 62 + 25762168 AUAAGUACCGCGCCAACUCUGAGCCCGAAUGAAGCAAUUCCAAUGAGUUGCAGCCUCCCAAU- ........((.((((....)).)).))......(((((((....)))))))...........- ( -11.10, z-score = -1.49, R) >droYak2.chr3L 14805565 62 + 24197627 AUAAGUAUCCCGCCAAGUCUGAGCCUGAAUGAAGCAAUUCCAAUGAGUUGCAGCCUCCCAAU- .......((..((((....)).))..)).....(((((((....)))))))...........- ( -9.30, z-score = -0.90, R) >droSec1.super_0 6840002 62 + 21120651 AUAAGUACCCCGCCAAGUCUGAGCCCGAAUGAAGCAAUUCCAAUGAGUUGCAGCCUCCCAAU- ...........((((....)).)).........(((((((....)))))))...........- ( -8.90, z-score = -1.38, R) >droSim1.chr3L 14047660 62 + 22553184 AUAAGUACCCCGCCAAGUCUGAGCCCGAAUGAAGCAAUUCCAAUGAGUUGCAGACUCCCAAU- ...............(((((((((.((...(((....)))...)).))).))))))......- ( -11.20, z-score = -2.61, R) >consensus AUAAGUACCCCGCCAAGUCUGAGCCCGAAUGAAGCAAUUCCAAUGAGUUGCAGCCUCCCAAU_ .................................(((((((....)))))))............ ( -6.11 = -5.83 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:31 2011