| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,710,502 – 14,710,611 |
| Length | 109 |
| Max. P | 0.931941 |
| Location | 14,710,502 – 14,710,611 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 93.77 |
| Shannon entropy | 0.10620 |
| G+C content | 0.45259 |
| Mean single sequence MFE | -27.58 |
| Consensus MFE | -23.45 |
| Energy contribution | -23.65 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.931941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14710502 109 + 24543557 UUUCGUUCCUCUAAGCUGUUUCUCUGUUCUCUUUUUGCGCCUCUUUUGGCCAUUUUUUUUUUUGUAGCCAACUAAGCUGCAACUCAUGAGCUGACAAUUUGCAGCCGUC ..............(((((.....(((((((....((.(((......))))).........(((((((.......))))))).....)))..))))....))))).... ( -23.40, z-score = -1.68, R) >droSim1.chr3L 14043254 104 + 22553184 UUUCGUUCCUCUAAGCUGUUUCUCUGUUCUCUUUUUGCGCCUCUUUUGGCCAUUUUUUUU-----AGCCAACUAAGCUGCAACUCAUGAGCGGACAAUUUGCAGCCGUC ..............(((((...(((((((.....(((((.((...(((((..........-----.)))))...)).))))).....)))))))......))))).... ( -24.90, z-score = -2.03, R) >droSec1.super_0 6835586 103 + 21120651 UAUGGUUCCUCUAAGCUGUUUCUCUGUUCUCUUUUUGCGCCUCUUUUGGCCAUUUUUUU------AGCCAACUGAGCUGCAACUCAUGAGCGGACAAUUUGCAGCCGUC ..............(((((...(((((((.....(((((.(((..(((((.(......)------.)))))..))).))))).....)))))))......))))).... ( -30.00, z-score = -2.69, R) >droYak2.chr3L 14801222 104 + 24197627 CUUGGUUCCUCUAAGCUGUUUCUCUGUUCUCUUUUUGCGCCUCUGUUGGCCCUUUUUUUU-----AGCCAACUAAGCUGCAACUCAUGAGCGGACAAUUUGCAGCCGUC .((((.....))))(((((...(((((((.....(((((.((..((((((..........-----.))))))..)).))))).....)))))))......))))).... ( -30.10, z-score = -2.82, R) >droEre2.scaffold_4784 14681365 104 + 25762168 UUUGGUACCUCUAAGCUGUUUCUCUGUUCCCUUUUUGCGCCUCUGUUGGCCCUUUUUUUU-----AGCCAACUAAGCUGCAACUCAUGAGCGGACAAUUUGCAGCCGUC .((((.....))))(((((...(((((((.....(((((.((..((((((..........-----.))))))..)).))))).....)))))))......))))).... ( -29.50, z-score = -2.66, R) >consensus UUUGGUUCCUCUAAGCUGUUUCUCUGUUCUCUUUUUGCGCCUCUUUUGGCCAUUUUUUUU_____AGCCAACUAAGCUGCAACUCAUGAGCGGACAAUUUGCAGCCGUC ..............(((((...(((((((.....(((((.((...(((((................)))))...)).))))).....)))))))......))))).... (-23.45 = -23.65 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:30 2011