Locus 7412

Sequence ID	dm3.chr3L
Location	14,689,026 – 14,689,085
Length	59
Max. P	0.981655

overview

Window 0

Location	14,689,026 – 14,689,085
Length	59
Sequences	5
Columns	67
Reading direction	forward
Mean pairwise identity	57.40
Shannon entropy	0.72227
G+C content	0.43875
Mean single sequence MFE	-11.76
Consensus MFE	-7.10
Energy contribution	-7.30
Covariance contribution	0.20
Combinations/Pair	1.60
Mean z-score	-0.93
Structure conservation index	0.60
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.08
SVM RNA-class probability	0.981655
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14689026 59 + 24543557
-CGUUGUAGUCUAGAGCCUAGACUAUCGCAUACCCCUCUAAAGAAUGUGCAAGCAAGAUG-------
-.((((((((((((...))))))))).(((((....((....)).))))).)))......------- ( -13.70, z-score =  -2.10, R)
>droSim1.chr3L 14021312 59 + 22553184
-CGCUGUAGUCUAGAGCCUCGACUAUCGCAUACCCCUCGAAAGAAUGUUAAAGGGAGAUG-------
-.((.((((((.((...)).)))))).))....(((((....))........))).....------- ( -13.80, z-score =  -1.07, R)
>droSec1.super_0 6814192 59 + 21120651
-CGCUGUAAUCUAGAGCCUCGACUAUCGCAUACCCCUCGAAAGAAUGUGCAAGGAAGAUG-------
-.......((((....(((.(.....)(((((....((....)).))))).))).)))).------- (  -9.60, z-score =  -0.02, R)
>droYak2.chr3L 14779431 55 + 24197627
-UGCUGUGGUCGAGUACAUCGACUAUCGCUUACCCCGCUACAUAAAUUGUGUUGUA-----------
-.((.((((((((.....)))))))).)).......((.((((.....)))).)).----------- ( -15.40, z-score =  -2.22, R)
>droWil1.scaffold_181136 1072914 67 - 2313701
CUGUUUUAACUUUGAGCAUAUUAUGGUACACAGUUUUUUAAUGGAGAAAGAAAAUAAAAACCAGAGG
.(((((.......))))).....((((......((((((........))))))......)))).... (  -6.30, z-score =   0.77, R)
>consensus
_CGCUGUAGUCUAGAGCCUCGACUAUCGCAUACCCCUCUAAAGAAUGUGCAAGGAAGAUG_______
..((.((((((((.....)))))))).))...................................... ( -7.10 =  -7.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:28 2011