| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,682,446 – 14,682,497 |
| Length | 51 |
| Max. P | 0.549729 |
| Location | 14,682,446 – 14,682,497 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.89 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14682446 51 + 24543557 UCUGGCGCGUCCUGCGUCCUGCGGCAGGAAAGGCACACAAAAGUGAAACAG .(((((...((((((........))))))...)).(((....)))...))) ( -16.10, z-score = -0.89, R) >droSim1.chr3L 14014081 51 + 22553184 UCUGGCGCGUCCUGCGUCCUGCGGCAGGAAAGGCACACAAAAGUGAAACAG .(((((...((((((........))))))...)).(((....)))...))) ( -16.10, z-score = -0.89, R) >droYak2.chr3L 14772270 51 + 24197627 UCUGGCGCGUCCUGCGUCCUGCGGCAGGAAAGGCACACAAAAGUGAAACAG .(((((...((((((........))))))...)).(((....)))...))) ( -16.10, z-score = -0.89, R) >droEre2.scaffold_4784 14653486 51 + 25762168 UCUGGCGCGUCCUGCGUCCUGCGGCAGGAAAGGCACACAAAAGUGAAACAG .(((((...((((((........))))))...)).(((....)))...))) ( -16.10, z-score = -0.89, R) >consensus UCUGGCGCGUCCUGCGUCCUGCGGCAGGAAAGGCACACAAAAGUGAAACAG .(((((...((((((........))))))...)).(((....)))...))) (-16.10 = -16.10 + -0.00)
| Location | 14,682,446 – 14,682,497 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -15.70 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.88 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14682446 51 - 24543557 CUGUUUCACUUUUGUGUGCCUUUCCUGCCGCAGGACGCAGGACGCGCCAGA ..........((((.((((...((((((........)))))).)))))))) ( -15.70, z-score = -0.88, R) >droSim1.chr3L 14014081 51 - 22553184 CUGUUUCACUUUUGUGUGCCUUUCCUGCCGCAGGACGCAGGACGCGCCAGA ..........((((.((((...((((((........)))))).)))))))) ( -15.70, z-score = -0.88, R) >droYak2.chr3L 14772270 51 - 24197627 CUGUUUCACUUUUGUGUGCCUUUCCUGCCGCAGGACGCAGGACGCGCCAGA ..........((((.((((...((((((........)))))).)))))))) ( -15.70, z-score = -0.88, R) >droEre2.scaffold_4784 14653486 51 - 25762168 CUGUUUCACUUUUGUGUGCCUUUCCUGCCGCAGGACGCAGGACGCGCCAGA ..........((((.((((...((((((........)))))).)))))))) ( -15.70, z-score = -0.88, R) >consensus CUGUUUCACUUUUGUGUGCCUUUCCUGCCGCAGGACGCAGGACGCGCCAGA ..........((((.((((...((((((........)))))).)))))))) (-15.70 = -15.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:27 2011