| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,636,855 – 14,636,956 |
| Length | 101 |
| Max. P | 0.842484 |
| Location | 14,636,855 – 14,636,956 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 77.59 |
| Shannon entropy | 0.41647 |
| G+C content | 0.46009 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.75 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14636855 101 + 24543557 ------CGGAAAAGGGUUCUCUAUAGAUCUCUUUUUCCAUCUCCGUCUACUACACA---CUACAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCUGAGC ------.(((((((((.(((....))).).))))))))..(((.((..(((((...---(((...(((.(((((......))))).))).)))))))).....)).))). ( -24.10, z-score = -1.49, R) >droAna3.scaffold_13337 18832762 101 - 23293914 ------CUGAACCAUGGCCUACCUGAGACCCUUUCCCCCCUUGGGAGAAUCUCUCUU--GAAUCUCUAUCUUCGGGGUUUUUGGGCUGCUUAGGUAGUUU-CUGUCGAGC ------........(((((((((((((.(((...((((.....(((((.((......--)).)))))......)))).....)))...)))))))))...-..))))... ( -34.00, z-score = -1.52, R) >droEre2.scaffold_4784 14607114 110 + 25762168 CAGCCCCGGAAAAGGGUUCUCUAUAGAUCUCUUUUUCCAUCUCCGUCUACGGCACAUCACUACAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCCGAGC .(((((.(((((((((.(((....))).).))))))))....(((.....(..((((......))))..).)))........)))))((((.(((((....))))))))) ( -32.60, z-score = -2.65, R) >droYak2.chr3L 14725459 104 + 24197627 -----CGGAAAAAGGGUUCUCUAUGGAUCUCUUUUUCUAUAUCCAUCUCCAUCUCCGU-CUAGAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCUGAGC -----.(((((((((((((.....))))).))))))))...........(((((....-..)))))...(((((......)))))..((((((.(((....))))))))) ( -26.80, z-score = -1.52, R) >droSec1.super_0 6762279 101 + 21120651 ------CGGAAAAGGGUUCUCCAUAGAUCUCUUUUUCCAUCUCCGUCUACUACACA---CUACAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCUGAGC ------.(((((((((.(((....))).).))))))))..(((.((..(((((...---(((...(((.(((((......))))).))).)))))))).....)).))). ( -24.10, z-score = -1.37, R) >droSim1.chr3L 13967517 100 + 22553184 ------CGGAAAAGGGUUCUCCAUAGAUCUCUUUU-CCAUCUCCGUCUACUACACA---CAACAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCUCAGC ------.(((((((((.(((....))).)))))))-))..................---......(((.(((((......))))).)))...(((((....))))).... ( -24.30, z-score = -2.24, R) >consensus ______CGGAAAAGGGUUCUCCAUAGAUCUCUUUUUCCAUCUCCGUCUACUACACA___CUACAUGUAUCUCGGUUAUUUUCGGGCUGCUUAGGUAGUUUUCUGCUGAGC .......(((((((((.(((....))).)))))))))................................((((((.......(((((((....)))))))...)))))). (-15.99 = -16.75 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:21 2011