| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,633,259 – 14,633,359 |
| Length | 100 |
| Max. P | 0.813001 |
| Location | 14,633,259 – 14,633,353 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.33 |
| Shannon entropy | 0.55544 |
| G+C content | 0.49688 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.06 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14633259 94 - 24543557 ----CCAGACAUUCUCCGGCGUAGCCUCCAUUCG---------CCGGGACCGU-GUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCACAAAUUAACAAAUCUUUCAU- ----...(((((((.((((((...........))---------))))))..))-)))....((....))((((((......)))))).....................- ( -26.10, z-score = -2.28, R) >droSim1.chr3L 13963916 94 - 22553184 ----CCAGACAUUCUCCGGCGUAGCCUCCAUUCG---------ACGGGGCCGU-GUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU- ----..(((........((((..(((((......---------..)))))..)-)))..........((((((((......))))))))...........))).....- ( -26.70, z-score = -1.54, R) >droSec1.super_0 6758634 94 - 21120651 ----CCAGACAUUCUCCGGCGUAGCCUCCAUUCG---------ACGGGACCGU-GUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU- ----...(((((..(((.(((...........))---------.).)))..))-)))..........((((((((......))))))))...................- ( -24.60, z-score = -1.36, R) >droYak2.chr3L 14721729 107 - 24197627 CAUUUCAGACAUUCCCCGGCGUAGCCUCCAUUCGCCAUUCGCCAUUCGGCCGU-GUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU- ..(((((((........((((...........))))....(((....)))...-....)))).))).((((((((......))))))))...................- ( -28.30, z-score = -2.49, R) >droEre2.scaffold_4784 14603513 93 - 25762168 ----CCAGACAUUCUCCGGCGUAGCCUCCAUUCG---------CCGGG-CCGU-GUUAUCUGCAAACGGGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU- ----...(((((..(((((((...........))---------)))))-..))-)))..........(.((((((......)))))).)...................- ( -27.70, z-score = -1.82, R) >droAna3.scaffold_13337 18829336 83 + 23293914 CCCGACAGACAUUCUCCGGCGU---------------------AUGG---CGC-GUUAUCUGCAAACGCGCCAUCGAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU- ...((.(((.........(((.---------------------....---)))-.............((((((((......))))))))...........))).))..- ( -23.30, z-score = -1.15, R) >droPer1.super_12 615014 89 + 2414086 ----GCGGACAUUCCAAGGCGUAGCAU--------------CCCCCUCCCCGCGGCUAUCUGCAAA-GUGUAAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCGU- ----((((..........((...))..--------------........)))).(((((((((...-.((....))..))))))))).....................- ( -18.45, z-score = 0.44, R) >dp4.chrXR_group6 12203492 97 + 13314419 ----GCGGACAUUCCAAGGCGUAGCAUCCCCCU------CCCCCCCUCCCCGCGGCUAUCUGCAAA-GUGUAAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCGU- ----((((........(((.(........))))------..........)))).(((((((((...-.((....))..))))))))).....................- ( -18.37, z-score = 0.63, R) >droGri2.scaffold_15110 8185672 91 + 24565398 ----CAACGCAUUCUUUGGCGUAGACA--------------AGAGUGCGGCAUAGUUAUCAACAAACGCACCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUGCCAU ----....((((((((.(.......))--------------)))))))((((..(((.......)))((.(((((......))))).))..............)))).. ( -26.00, z-score = -2.99, R) >droMoj3.scaffold_6680 4787683 87 + 24764193 ------CAGCAUGGCAUGGC-CAACCC--------------AGCGU-CGGCGACCUUAUCAACAAACACGCCAUCGAAGUAGGUGGCGCAAAUUAACAAAUCUUUCCAU ------..((.((((.(((.-....))--------------)..))-)))).................(((((((......)))))))..................... ( -19.90, z-score = -0.45, R) >droVir3.scaffold_13049 16724667 91 - 25233164 ----CAACACAUUCCCUGGCGUAGACA--------------ACUGAGCGGCAAAGUUAUCAACAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCCAU ----..............((.(((...--------------.))).))((.((((............((((((((......))))))))............)))))).. ( -21.25, z-score = -1.97, R) >consensus ____CCAGACAUUCUCCGGCGUAGCCUCC______________ACGGCGCCGU_GUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACAAAUCUUUCAU_ ...................................................................((((((((......)))))))).................... (-11.78 = -12.06 + 0.28)
| Location | 14,633,269 – 14,633,359 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.66889 |
| G+C content | 0.54052 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.06 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14633269 90 - 24543557 ---------GGCCAGCCAGACAUUCUCCGGCGUAGCCUCCA---UUCGCCGGGACCGUG------UUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCACAAAUUAACA ---------((....)).(((((((.((((((.........---..))))))))..)))------))....((....))((((((......))))))........... ( -27.90, z-score = -1.37, R) >droSim1.chr3L 13963926 90 - 22553184 ---------GGCCAGCCAGACAUUCUCCGGCGUAGCCUCCA---UUCGACGGGGCCGUG------UUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACA ---------((((.(((.((.....)).)))....((((..---...)).)))))).((------(.....)))...((((((((......))))))))......... ( -30.70, z-score = -1.44, R) >droSec1.super_0 6758644 90 - 21120651 ---------GGCCAGCCAGACAUUCUCCGGCGUAGCCUCCA---UUCGACGGGACCGUG------UUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACA ---------(((..(((.((.....)).)))...)))....---....(((....))).------............((((((((......))))))))......... ( -28.10, z-score = -1.15, R) >droYak2.chr3L 14721739 108 - 24197627 GGCCAGGCAGACAUUUCAGACAUUCCCCGGCGUAGCCUCCAUUCGCCAUUCGCCAUUCGGCCGUGUUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACA ((((.(((.((....))...........((((...........))))....)))....)))).(((.....)))...((((((((......))))))))......... ( -33.30, z-score = -1.73, R) >droEre2.scaffold_4784 14603523 93 - 25762168 -----GGCCAGCCGGCCAGACAUUCUCCGGCGUAGCCUCCA---UUCGCCGGG-CCGUG------UUAUCUGCAAACGGGCCAUCAAAGUAGGUGGCGCAAAUUAACA -----((((....)))).(((((..(((((((.........---..)))))))-..)))------))..........(.((((((......)))))).)......... ( -35.30, z-score = -1.55, R) >droAna3.scaffold_13337 18829346 84 + 23293914 ------------GACCCAACCGACCCGACAGACAUUCUCCG---GCGUAUGG---CGCG------UUAUCUGCAAACGCGCCAUCGAAGUAGGUGGCGCAAAUUAACA ------------(.((((.((.(((((..((.....)).))---)((.((((---((((------((.......))))))))))))..)).))))).))......... ( -25.50, z-score = -1.22, R) >droPer1.super_12 615024 85 + 2414086 ---------GACGGGGCGGACAUUCCAAGGCGUAGCAU--------CCCCCUCCCCGCGGC-----UAUCUGCAAA-GUGUAAUCAAAGUAGGUGGCGCAAAUUAACA ---------...((((.((.....)).(((.(......--------..))))))))(((.(-----(((((((...-.((....))..)))))))))))......... ( -24.20, z-score = 0.12, R) >dp4.chrXR_group6 12203502 93 + 13314419 ---------GACGGGGCGGACAUUCCAAGGCGUAGCAUCCCCCUCCCCCCCUCCCCGCGGC-----UAUCUGCAAA-GUGUAAUCAAAGUAGGUGGCGCAAAUUAACA ---------((.((((.(((.........((...)).......))))))).))...(((.(-----(((((((...-.((....))..)))))))))))......... ( -25.69, z-score = 0.43, R) >droGri2.scaffold_15110 8185683 86 + 24565398 ---------GGGAAUCAACGCAUUCUUUGGCGUAGACA-----AGAGUGCGGCAUAG--------UUAUCAACAAACGCACCAUCAAAGUAGGUGGCGCAAAUUAACA ---------.........(((((((((.(.......))-----))))))))......--------............((.(((((......))))).))......... ( -22.10, z-score = -2.18, R) >droMoj3.scaffold_6680 4787694 81 + 24764193 -----------------AUAGUCAGCAUGGCAUGGCCA-----ACCCAGCGUCGGCG-----ACCUUAUCAACAAACACGCCAUCGAAGUAGGUGGCGCAAAUUAACA -----------------...(((.((.((((.(((...-----..)))..)))))))-----))..............(((((((......))))))).......... ( -22.20, z-score = -1.12, R) >droVir3.scaffold_13049 16724678 86 - 25233164 ---------GAUCAUCAACACAUUCCCUGGCGUAGACA-----ACUGAGCGGCAAAG--------UUAUCAACAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACA ---------......................((.((.(-----(((.........))--------)).)).))....((((((((......))))))))......... ( -19.60, z-score = -1.29, R) >consensus _________GGCCAGCCAGACAUUCCCCGGCGUAGCCUCCA___UUCGCCGGCACCGCG______UUAUCUGCAAACGCGCCAUCAAAGUAGGUGGCGCAAAUUAACA .............................................................................((((((((......))))))))......... (-11.78 = -12.06 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:20 2011