| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,600,169 – 14,600,282 |
| Length | 113 |
| Max. P | 0.820035 |
| Location | 14,600,169 – 14,600,282 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 67.32 |
| Shannon entropy | 0.52238 |
| G+C content | 0.27960 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.85 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14600169 113 + 24543557 AAUUUAAAGAAAAAAAUUGUAUGCAAACAAAUAUCUUUUCAUUUGCAAAGAGUUUAAGUUUUCAAGUAUACGGACGACUUCGAGUUUAUAUACUUGUUCUUUUUGGAGCUAAC-- ........((((((((((.(.((((((..((......))..)))))).).)))))...)))))(((((((..(((........)))..)))))))(((((....)))))....-- ( -23.00, z-score = -1.92, R) >droYak2.chr3L 14688237 99 + 24197627 ---------------AUUUUAAGGAAGAAUAUUUUGCAGCAUUUGUAAAGGGUUUGAGUUUCCAAG-AUGAGGACGCCUUUUGGUUUAUAUACUUGUUCUUCUUUUUGAAGCUUA ---------------...........((((.((((((((...)))))))).))))(((((((.(((-(.(((((((((....)))..........)))))).)))).))))))). ( -20.20, z-score = -0.46, R) >droSec1.super_0 6725881 96 + 21120651 AAUGUAAAGAAAAAAAUUGUAUGCAAACAAAUAUCUUUGCAUUUGCAAAGAGUUUAAGUUUUCAAGUAUAAGGACGACUUCUGGUAUAUAUACUUA------------------- ........(((((...((((......))))...(((((((....))))))).......)))))(((((((...((........))...))))))).------------------- ( -17.70, z-score = -1.45, R) >droSim1.chr3L 13928205 96 + 22553184 AAUAUAAAGAAAAGAAUUGUAUGCAAACAAAUAUCUUUGCAUUUGCAAAGAGCUUAAGUUUUUAAGUUUAAGGACGACUUCUGGUUUAUAUACUUA------------------- ..................(((((.((((.....(((((((....)))))))......(((((((....)))))))........)))).)))))...------------------- ( -18.20, z-score = -1.34, R) >consensus AAU_UAAAGAAAAAAAUUGUAUGCAAACAAAUAUCUUUGCAUUUGCAAAGAGUUUAAGUUUUCAAGUAUAAGGACGACUUCUGGUUUAUAUACUUA___________________ ................((((......))))...(((((((....)))))))...........((((((((..(((........)))..))))))))................... (-11.10 = -11.85 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:17 2011