| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,572,042 – 14,572,134 |
| Length | 92 |
| Max. P | 0.890438 |
| Location | 14,572,042 – 14,572,134 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 87.83 |
| Shannon entropy | 0.24933 |
| G+C content | 0.34251 |
| Mean single sequence MFE | -23.61 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.59 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14572042 92 - 24543557 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUGUGUACGUU-UGG------------ ((((........)-)))((((((((..(((((((((((.((......)).))))))))))).........((((.....)))))))))))-)..------------ ( -25.50, z-score = -2.92, R) >droGri2.scaffold_15110 8114135 102 + 24565398 CAUGAAAAUGAGCAACGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUACAUACAAAUAUUGUAUGCGUAU---- ....((((((.(((.((...)))))..(((((((((((.((......)).)))))))))))..........))))))...((((((.....)))))).....---- ( -22.90, z-score = -1.40, R) >droVir3.scaffold_13049 16659183 105 - 25233164 CAUGAAAAUGAGCAACGAAACGUGCGACAAGCGACGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUACAUACACACA-UAUAUAUAUAUAUAU ....((((((.(((.((...)))))..(((((((..((.((......)).))..)))))))..........))))))............(-(((((....)))))) ( -16.80, z-score = -0.32, R) >droWil1.scaffold_181136 626251 88 + 2313701 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGACUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUUUAUAUGCAUAU----------------- ...(((((((.((-(((...)))))..((((((((((((((......))))))))))))))..........)))))))...........----------------- ( -24.90, z-score = -3.83, R) >droPer1.super_41 625986 96 - 728894 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUACAUGUGUA-UGUAUAG-------- ....((((((.((-(((...)))))..(((((((((((.((......)).)))))))))))..........)))))).(((((((....)-)))))).-------- ( -24.80, z-score = -2.58, R) >dp4.chrXR_group6 7269489 96 - 13314419 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUACAUGUGUA-UGUAUAG-------- ....((((((.((-(((...)))))..(((((((((((.((......)).)))))))))))..........)))))).(((((((....)-)))))).-------- ( -24.80, z-score = -2.58, R) >droAna3.scaffold_13337 18773628 99 + 23293914 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUAUGUAUGUG-UGUGCGCCUG----- (((....))).((-((...(((((((.(((((((((((.((......)).)))))))))))((((..(....)..))))...))))))).-.)))).....----- ( -25.20, z-score = -1.77, R) >droEre2.scaffold_4784 14541680 92 - 25762168 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUGUGUAUGUU-UGG------------ ((((........)-)))((((((((..(((((((((((.((......)).))))))))))).........((((.....)))))))))))-)..------------ ( -23.70, z-score = -2.39, R) >droYak2.chr3L 14659472 92 - 24197627 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUGUGUAUGUU-UGC------------ ((((........)-)))((((((((..(((((((((((.((......)).))))))))))).........((((.....)))))))))))-)..------------ ( -23.70, z-score = -2.33, R) >droSec1.super_0 6696901 92 - 21120651 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUGUGUAUGUU-UGG------------ ((((........)-)))((((((((..(((((((((((.((......)).))))))))))).........((((.....)))))))))))-)..------------ ( -23.70, z-score = -2.39, R) >droSim1.chr3L 13897792 92 - 22553184 CAUGAAAAUGAGC-AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUGUGUAUGUU-UGG------------ ((((........)-)))((((((((..(((((((((((.((......)).))))))))))).........((((.....)))))))))))-)..------------ ( -23.70, z-score = -2.39, R) >consensus CAUGAAAAUGAGC_AUGAAACGUGCGACAAGCGAUGGAGUCCAUUUUGAGUUUAUUGUUUGAUGAUUUGAACAUUUUAUAUAUGUAUGUU_UGU____________ ....((((((.((.(((...)))))..(((((((((((.((......)).)))))))))))..........))))))............................. (-16.65 = -16.59 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:13 2011