| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,547,542 – 14,547,661 |
| Length | 119 |
| Max. P | 0.519204 |
| Location | 14,547,542 – 14,547,661 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.47 |
| Shannon entropy | 0.41606 |
| G+C content | 0.31516 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -11.00 |
| Energy contribution | -11.88 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14547542 119 + 24543557 UAAGCAGGCCAAGAUGAAUACAUUUCGAAUGAAAUAUAAUACUACUGAUAGACCAUAUAGAUUUAUACUAUAUGUCAUACAAAUCCGCUGAAAUACCAUACAGACUG-GUUUCAAUUCUU ..(((.((.....((((....(((((....)))))..................(((((((.......)))))))))))......)))))(((..((((.......))-)))))....... ( -16.30, z-score = -0.18, R) >droEre2.scaffold_4784 14516972 111 + 25762168 UAAACAGGCCAAGAUGAAUACAUUUCAUAUGAAAUAUAAGUCUGCUGAUAGACCAUAUAGAUUUAUACUACGCGACAUACCAGUCUGCUUGAAGAUUUGAUUUCAAUUCUU--------- ....(((((....(((((.....)))))......((((((((((.((......))..))))))))))......(((......))).)))))((((.(((....))).))))--------- ( -20.60, z-score = -1.49, R) >droYak2.chr3L 14633430 105 + 24197627 UAAACAGGCCAAGAUGAAUACGUUUCACAUGAAAUAUAAGUCUACUGAUAGACCAUAUAGAUUUACACUACGCGACAUACCAGCCUGCUGAAAAAUUCGAUUCUU--------------- ....(((((....(((.....(((((....))))).((((((((.((......))..))))))))..........)))....)))))..................--------------- ( -16.90, z-score = -1.50, R) >droSec1.super_0 6672772 115 + 21120651 UAAGCAGGCCAAGAUGAAAACUUUUCAUAUGAAAUAUAAUUCUACUGAUAGACCAUAUAGAUUUAUA-----UGACAUACAAGUCUGCUGAAAUACCAUAUAGAUUUGGUUUCAAUUCUU ..(((((((....(((((.....)))))(((..((((((.((((.((......))..)))).)))))-----)..)))....)))))))(((..((((........)))))))....... ( -23.70, z-score = -2.34, R) >droSim1.chr3L 13873199 120 + 22553184 UAAGCAGGCCAAGAUGAAAACAUUUCGAAUGAAAUAUAAUUCUACUGAUAGACCAUAUAGAUUUAUACUAUAUAACAUACAAGUCUGCUGAAAUACCACACAGACUUUGUUUAAAUUCUU ((((((((.(.(((((....))))).((((........))))........).))((((((.......)))))).......(((((((.((........)))))))))))))))....... ( -17.80, z-score = -1.45, R) >consensus UAAGCAGGCCAAGAUGAAUACAUUUCAAAUGAAAUAUAAUUCUACUGAUAGACCAUAUAGAUUUAUACUACAUGACAUACAAGUCUGCUGAAAUACCAGAUAGACUU_GUUU_AAUUCUU ..(((((((....(((......((((....))))(((((.((((.((......))..)))).)))))........)))....)))))))............................... (-11.00 = -11.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:05 2011