| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,541,391 – 14,541,482 |
| Length | 91 |
| Max. P | 0.764225 |
| Location | 14,541,391 – 14,541,482 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 72.06 |
| Shannon entropy | 0.48337 |
| G+C content | 0.45698 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -13.28 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14541391 91 + 24543557 CAUAUGUUGACGGCAUGCUGAUACGUCUUUUUCGGCGUGGGCCUGGCUAUGGGAACAUUUCCGUCUGCUCUGCUGUUAUCAUCAACUUUUU- ...(((.((((((((((((((..........)))))))((((.(((..(((....)))..)))...)))).))))))).))).........- ( -27.60, z-score = -2.43, R) >dp4.chrXR_group6 7237615 81 + 13314419 CAUAUGUUGGUUUCAUGUUUAU------CACUCGGCGUGGGCCUGCUUUCAAGAACAACAUUUCCCGCUGAUAAGUGAUUAGGCAGU----- ...............(((((((------(((((((((.(((..((.............))..)))))))))...)))).))))))..----- ( -18.12, z-score = 0.02, R) >droPer1.super_41 590675 81 + 728894 CAUAUGUUGGUUUCAUGUUUAU------CACUCGGCGUGGGCCUGCUUUCAAGAACAACAUUUCCCGCUGAUUAGUGAUUAGGCAGU----- ...............(((((((------(((((((((.(((..((.............))..)))))))))...)))).))))))..----- ( -18.12, z-score = 0.00, R) >droSim1.chr3L 13865094 92 + 22553184 CAUAUGUUGAUGGCAUGCUGAUACGUCUUUUUCGGCGUGGGCCUGGCUAUGGGAAUAUUUCCGUCUGCUCUGCUGUUAUCACCGACUUUUUU ....((.((((((((((((((..........))))))).(((..(((.((((((....))))))..)))..)))))))))).))........ ( -26.10, z-score = -1.72, R) >droSec1.super_0 6666646 92 + 21120651 CAUAUGUUGAUGGCAUGCUGAUACGUCUUUUUCGGCGUGGGCCUGGCUAUGGGAAUAUUUCCGUCUGCUCUGCUAUUAUCACCAACUUUUUU .....((((.(((((((((((..........))))))))(((..(((.((((((....))))))..)))..)))....))).))))...... ( -26.20, z-score = -2.18, R) >droEre2.scaffold_4784 14507880 92 + 25762168 CAUAUGUUGACGGCAUGCUGAUACGUCUUUUUCGGCGUGGGCCUGGCUAUGGGAACAUUUUCGUCUGCUCUGCUGUUAUCACCAACUUUUUU ....((.((((((((((((((..........)))))))((((..(((.(((....)))....))).)))).))))))).))........... ( -26.20, z-score = -2.10, R) >consensus CAUAUGUUGAUGGCAUGCUGAUACGUCUUUUUCGGCGUGGGCCUGGCUAUGGGAACAUUUCCGUCUGCUCUGCUGUUAUCACCAACUUUUU_ .....((.(((((((((((((..........))))))))..((((....)))).......))))).))........................ (-13.28 = -13.65 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:01 2011