| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,528,091 – 14,528,150 |
| Length | 59 |
| Max. P | 0.955427 |
| Location | 14,528,091 – 14,528,150 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.29156 |
| G+C content | 0.46695 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -14.73 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955427 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14528091 59 + 24543557 ---------GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGCUGCAUAUAUAUUCG-------- ---------((((((((.((..(((((((((........)))).))).....))..)).)))))))).-------- ( -19.20, z-score = -2.66, R) >droEre2.scaffold_4784 14494226 59 + 25762168 ---------GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGCUGCAUAUACAUUCG-------- ---------((((((((.((..(((((((((........)))).))).....))..)).)))))))).-------- ( -21.10, z-score = -2.97, R) >droYak2.chr3L 14613466 67 + 24197627 ---------GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGCUGCAUAUAUGUAUAUAUAUUCG ---------((((((((.(((((((((.........))))).(..((.....))..)...))))...)))))))). ( -17.90, z-score = -1.09, R) >droSec1.super_0 6653441 59 + 21120651 ---------GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGUUGCAUAUAUAUUCG-------- ---------((((((((.((..(((((((((........)))).))).....))..)).)))))))).-------- ( -17.80, z-score = -2.59, R) >droSim1.chr3L 13851287 59 + 22553184 ---------GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGCUGCAUAUAUAUUCG-------- ---------((((((((.((..(((((((((........)))).))).....))..)).)))))))).-------- ( -19.20, z-score = -2.66, R) >droAna3.scaffold_13337 18730635 68 - 23293914 AGUGUGCACAUGUGGUUGUGUGGCGUCGCGUUUGUUGAUGCGGUGGCUAAUGGUUGCAUACAAAAAAA-------- .((((((((((......))))(.(..((((((....))))))..).)........)))))).......-------- ( -21.40, z-score = -1.21, R) >consensus _________GAGUGUGUUUGUGGCGUCUCGUUUGUUGAUGCGGUGGCUAAUGGCUGCAUAUAUAUUCG________ .........((((((((.((..(((((((((........)))).))).....))..)).))))))))......... (-14.73 = -15.10 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:57 2011