Locus 7388

Sequence ID dm3.chr3L
Location 14,527,690 – 14,527,801
Length 111
Max. P 0.568538
window10170

overview

Window 0

Location 14,527,690 – 14,527,801
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 85.94
Shannon entropy 0.27790
G+C content 0.51900
Mean single sequence MFE -32.07
Consensus MFE -26.10
Energy contribution -27.52
Covariance contribution 1.42
Combinations/Pair 1.07
Mean z-score -1.24
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.15
SVM RNA-class probability 0.568538
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14527690 111 + 24543557
UCGGCCAGCGGAAUGCGAAUCGCGAACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCACCCGAACACGAAAAAACCACGAUCUGCACGCAGAAAAAGUAGUGA
((((((.((((..(((((.(((((..........))))).)))))....)))))))...((((((..........))))))....)))((((....))))........... ( -31.10, z-score =  -0.66, R)
>droSim1.chr3L 13850864 111 + 22553184
UCGGCCAGCGGAAUGCGAAUCGCGGACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCAUCCGAACACGAAAAAACCACGAUCUGCACGCAGAAAAAGUUGUGA
((((((.((((..(((((.((((((........)))))).)))))....)))))))......(((....)))..)))......(((((((((....)))).....))))). ( -35.70, z-score =  -1.47, R)
>droSec1.super_0 6653019 111 + 21120651
UCGGCCAGCGGAAUGCGAAUCGCGGACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCAUCCGGAACACAAAAAACCACGAUCUGCACGCAGAAAAACUUGUGA
...(((.((((..(((((.((((((........)))))).)))))....)))))))...........................(((((((((....)))).....))))). ( -34.00, z-score =  -1.44, R)
>droYak2.chr3L 14613057 110 + 24197627
UCGGCCAGCGGAAUGCGAAUCGCGGACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCAUCCGAGCACGAAAAAACAACGAUCUGCACGCGGAAAAAUUUGUG-
...(((.((((..(((((.((((((........)))))).)))))....)))))))..........((((.(((.((...........)))))...))))..........- ( -34.20, z-score =  -0.89, R)
>droEre2.scaffold_4784 14493812 111 + 25762168
UCGGCCAGCGGAAUGCGAAUCGCGGACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCAUCCGAACACGAAAAAACAACAAUCUGCACGCAGAAAAAGAGGUGA
...(((.((((..(((((.((((((........)))))).)))))....))))))).(((((((....((....))............((((....))))..))))))).. ( -34.00, z-score =  -1.49, R)
>droAna3.scaffold_13337 18730426 89 - 23293914
UCGGCCAGCGGAAUGCGAAUCGCGAACGGC-------GAAUUGCACUUGCUGCGGCAACUUUUUCAUCCGACCACGAAAAAACCAACAACAACAAA---------------
...(((.((((..(((((.((((.....))-------)).)))))....)))))))...((((((..........))))))...............--------------- ( -23.40, z-score =  -1.48, R)
>consensus
UCGGCCAGCGGAAUGCGAAUCGCGGACGGCAAACUGCGAAUUGCACUUGCCGCGGCAACUUUUUCAUCCGAACACGAAAAAACCACGAUCUGCACGCAGAAAAAGUUGUGA
...(((.((((..(((((.((((((........)))))).)))))....)))))))...((((((..........)))))).......((((....))))........... (-26.10 = -27.52 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:56 2011