| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,515,162 – 14,515,249 |
| Length | 87 |
| Max. P | 0.857287 |
| Location | 14,515,162 – 14,515,249 |
|---|---|
| Length | 87 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 64.36 |
| Shannon entropy | 0.71046 |
| G+C content | 0.32025 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -6.57 |
| Energy contribution | -7.35 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14515162 87 + 24543557 UCCGAAAUAGA--AAAAAU-UCCCGCAGCUUUGGGUUAUAAAUCUAAU-------------UUCUGGAUUGAUAUCGCAUAAGAGAUUUAUAACUUUUGUUCU ...(((.((((--(.....-..(((......)))(((((((((((...-------------((.(((((....))).)).)).))))))))))))))))))). ( -15.00, z-score = -0.52, R) >droSim1.chr3L 13843647 87 + 22553184 UCCGAAAUAUA--AAAAAA-UCCCGCAGCUUUGGGUUAUAAAUCUAAU-------------UUCUGGAUUGAUAUCGCCUGAGAGAUUUAUAACCUUGGUUCU ...........--......-....(.((((..(((((((((((((...-------------(((.((...(....).)).)))))))))))))))).))))). ( -18.80, z-score = -1.52, R) >droSec1.super_0 6645109 78 + 21120651 UCAGAAAUAGA--AAAAAAAUCCCGCAGCUUUGGGUUAUAAAUCUAAU-------------UUCUGGAUUG----------AGAGAUUUAUAACUUUUGCUCU ...........--...........(.(((...(((((((((((((...-------------(((......)----------)))))))))))))))..)))). ( -16.20, z-score = -1.44, R) >droYak2.chr3L 14604978 100 + 24197627 UGCGAAAUAGA--AUAAAA-UACCGCCGCUUUGGGUUAUAAAUCUUGUGGAGCACUCAAAUUUCUGGAUUGAUAUCGCAUAUGAGAUUUAUAACUUUUGUUCU ........(((--((((((-..(((......)))(((((((((((..((..((...((......))(((....))))).))..)))))))))))))))))))) ( -24.00, z-score = -2.26, R) >droEre2.scaffold_4784 14485859 101 + 25762168 UCCGAAAUAGA--AAAAAAUUCCCGCGGCUUUGGGUUAUAAAUCUAAUAGAGCACUCCAAUUUCUGGAUUGAUAUCGCAUAUAAGAUUUAUAACUUUUGUUCU .(((.....((--(.....)))...)))....(((((((((((((.(((((.((.((((.....)))).))...))...))).)))))))))))))....... ( -19.90, z-score = -1.20, R) >droAna3.scaffold_13337 18722337 103 - 23293914 CUCGAAAUAGAGAAAAAAAAUCCCAUUUCUUCUGCCCAUAAAUCUAUCAGAAGUCUCAACUUUUGGGAUUAAUAUCGCGCAGGAGAUUUAUAAUUUUUGUUUC (((......)))...((((((......(((((((((.((((((((..(((((((....))))))))))))..))).).))))))))......))))))..... ( -23.10, z-score = -2.28, R) >droMoj3.scaffold_6680 8431909 78 - 24764193 ------UUUCUAUUCAAAACUCUUUCUUCGUCAGUUUUU--AUCGAAGAAA-------------UAUGUUUGUUUCGC----AAGAUUUAUAAGUUUAUGGAG ------..(((((...(((((.((((((((.........--..))))))))-------------......((..((..----..))..))..)))))))))). ( -14.10, z-score = -1.79, R) >consensus UCCGAAAUAGA__AAAAAA_UCCCGCAGCUUUGGGUUAUAAAUCUAAU__A__________UUCUGGAUUGAUAUCGCAUAAGAGAUUUAUAACUUUUGUUCU ..........................(((...(((((((((((((......................................)))))))))))))..))).. ( -6.57 = -7.35 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:55 2011