| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,510,488 – 14,510,588 |
| Length | 100 |
| Max. P | 0.959968 |
| Location | 14,510,488 – 14,510,588 |
|---|---|
| Length | 100 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.91 |
| Shannon entropy | 0.43599 |
| G+C content | 0.47795 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14510488 100 + 24543557 UAC-CCAACUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGCGACG-AUUCCCCUUCUCGAAACCCUCUUCAUUUCAAGG (((-(((..(((((((((((((((((((...))))).)))))).))))))))....))-----.))))(((.(-(.......))))).................... ( -23.80, z-score = -0.86, R) >droSim1.chr3L 13838976 100 + 22553184 UAC-ACACCUCGCUGGCGAUUUAUGUGAAAAUUCUGUUAAAUUAGCCAGCGAAACGUG-----CGGUGCGACG-AUUCCCCAUCUCGAACCCCCCUUCACUCCAAGG ..(-((...((((((((((((((...((....))...)))))).))))))))...)))-----.(((.(((.(-((.....)))))).)))..((((......)))) ( -28.40, z-score = -3.31, R) >droSec1.super_0 6640494 100 + 21120651 UAC-CCAACUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGCGACG-AUUCCCCUUCUCGAAACCCACUUCAUUUCAAGG ...-((...(((((((((((((((((((...))))).)))))).))))))))...(((-----.(((.(((.(-(.......)))))..))))))..........)) ( -27.30, z-score = -2.11, R) >droYak2.chr3L 14600348 100 + 24197627 UAC-CCAACUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGCGACG-AUGCCCCUCCUCAAAACCCUCUUCAUUUCAAAG ...-.....(((((((((((((((((((...))))).)))))).)))))))).((((.-----((......))-))))............................. ( -22.60, z-score = -1.15, R) >droEre2.scaffold_4784 14481360 100 + 25762168 UAC-CCAACUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGUGACG-UUUCCCCUUCUCAAAACCCUCUUCAUUUCAAGG ...-((.....(((((((((((((((((...))))).)))))).))))))(((((((.-----.......)))-))))...........................)) ( -22.30, z-score = -0.88, R) >droAna3.scaffold_13337 18718076 93 - 23293914 UAC-CCAAGUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCACCGAAGCGUGAGGUUUGGUGCUACCUACAACCCCCCUUGCCAUUUU------------- ...-..((((((....))))))..(..((.....(((.....((((.((((((.(....).))))))))))...)))......))..)......------------- ( -23.10, z-score = -1.82, R) >dp4.chrXR_group6 7209798 82 + 13314419 UACACCGAGUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGCCUCCUACCUCUCUUCUUU-------------------- ..(((((..(((((((((((((((((((...))))).)))))).))))))))......-----)))))...................-------------------- ( -25.10, z-score = -2.38, R) >droPer1.super_41 562912 82 + 728894 UACACCGAGUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG-----CGGUGCCUCCUACCUCUCUUCUUU-------------------- ..(((((..(((((((((((((((((((...))))).)))))).))))))))......-----)))))...................-------------------- ( -25.10, z-score = -2.38, R) >consensus UAC_CCAACUCGCUGGCGAUUUAUGUGAGAAUUAUGUUAAAUUAGCCAGCGAAGCGUG_____CGGUGCGACG_AUUCCCCUUCUCGAAACCCUCUUCAUUUCAAGG .........(((((((((((((((((((...))))).)))))).))))))))....................................................... (-16.20 = -16.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:54 2011