| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,502,090 – 14,502,204 |
| Length | 114 |
| Max. P | 0.624054 |
| Location | 14,502,090 – 14,502,204 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Shannon entropy | 0.09020 |
| G+C content | 0.49474 |
| Mean single sequence MFE | -31.60 |
| Consensus MFE | -28.12 |
| Energy contribution | -28.44 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14502090 114 - 24543557 UCAACGAUGGCGAAAAGCAGGUCACCAAGAAAUUGGAACAGAACAAGGAAAUUGCUGGCAAAAAGGGUGCCAAGCUCCUUAAGAAGACCGAUGAGGAGCGACGUCUUGAGCAGG ((((.((((((.....)).((((.((((....))))........(((((....(((((((.......)))).)))))))).....))))............))))))))..... ( -32.70, z-score = -1.98, R) >droSim1.chr3L 13830781 114 - 22553184 UUAACGAUGGCGAAAAGCAGGUCACAAAGAAAUUGGAACAGAACAAGGAAAUUGCUGGCAAAAAGGGUGCCAAGCUCCUUAAAAAGACCGAUGAGGAGCGACGUCUUGAGCAGG ...(((.(((((........(((((((.....(((........))).....))).))))........))))).((((((((..........))))))))..))).......... ( -26.59, z-score = -0.73, R) >droSec1.super_0 6632221 114 - 21120651 UCAACGAUGGCGAAAAGCAGGUCACCAAGAAAUUGGAACAGAACAAGGAAAUUGCUGGCAAAAAGGGUGCCAAGCUCCUUAAAAAGACCGAUGAGGAGCGACGUCUUGAGCAGG ((((.((((((.....)).((((.((((....))))........(((((....(((((((.......)))).)))))))).....))))............))))))))..... ( -32.70, z-score = -2.12, R) >droYak2.chr3L 14591921 114 - 24197627 UGAACGAUGGUGAGAAGCAGGUCACCAAGAAACUGGAACAGAACAAGGAAAUCGCUGGCAAGAAGGGUGCCAAGCUCCUCAAGAAGACCGAUGAGGAGCGACUUCUCGAGCAGG .......((.((((((((.((.((((......(..(....((.........)).)..).......))))))..((((((((.(.....)..))))))))).)))))))..)).. ( -32.82, z-score = -1.00, R) >droEre2.scaffold_4784 14473377 114 - 25762168 UCAACGAUGGCGAAAAGCAGGUCACCAAGAAAUUGGAACAGAACAAGGAAACUGCUGGCAAAAAGGGUGCCAAGCUCCUUAAGAAGACCGACGAGGAGCGACGUCUUGAGCAGG ((((.((((((.....)).((.((((......(((...(((....((....)).))).)))....))))))..(((((((..(.....)...)))))))..))))))))..... ( -33.20, z-score = -1.87, R) >consensus UCAACGAUGGCGAAAAGCAGGUCACCAAGAAAUUGGAACAGAACAAGGAAAUUGCUGGCAAAAAGGGUGCCAAGCUCCUUAAGAAGACCGAUGAGGAGCGACGUCUUGAGCAGG .....(((.((.....))..))).((((....))))...............(((((((((.......))))..((((((((..........)))))))).........))))). (-28.12 = -28.44 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:52 2011