| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,495,667 – 14,495,770 |
| Length | 103 |
| Max. P | 0.705022 |
| Location | 14,495,667 – 14,495,770 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.66 |
| Shannon entropy | 0.41562 |
| G+C content | 0.49162 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14495667 103 - 24543557 UGGCAAAAACAAAACAGAACUCGCAG---GAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGCUGAAUACAGCUAAGUGCAUAUAGAGAACCCAACGAGCCCCAA .(((.....(......)..(((((.(---(.((...)))).))((((((((((((((((....))).))))))..)))))))....)))..........))).... ( -25.20, z-score = -1.67, R) >droAna3.scaffold_13337 18704711 90 + 23293914 -----CAGCAGGACCAGGAGCCAGAGUCAGAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGUUGCAGGCAGAAAAGUACACAAAUACAGGACG----------- -----((((.((.(..((..(........)..))..).)).)))).((((((.((((...........)))).))))))................----------- ( -17.50, z-score = 0.82, R) >droEre2.scaffold_4784 14467362 89 - 25762168 --------------CAGAACUCGCAG---CAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGCUGACUACAGCUAACUGCACAUAGAGAACCCAACGAGCCCCUA --------------.....((((..(---((((........))))).((((((((.(((..(((((....)))))..))))))).)))).......))))...... ( -28.40, z-score = -3.49, R) >droSec1.super_0 6626165 103 - 21120651 UAGCAAAAACAAAACAGAACUCGCAG---GAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGCUGAAUACAGCUAAGUGCAUAUAGAGAACCCAACGAGCCCCAA ...................(((((.(---(.((...)))).))((((((((((((((((....))).))))))..)))))))....)))................. ( -22.70, z-score = -1.63, R) >droSim1.chr3L 13824368 103 - 22553184 UAGCAAAAACAAAACAGAACUCGCAG---GAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGCUGAAUACAGCUAAGUGCAUAUAGAGAACCCAACGAGCCCCAA ...................(((((.(---(.((...)))).))((((((((((((((((....))).))))))..)))))))....)))................. ( -22.70, z-score = -1.63, R) >consensus U_GCAAAAACAAAACAGAACUCGCAG___GAGCCAAGCCCAGCUGCACUUUUGUGUCAGAAAGCUGAAUACAGCUAAGUGCAUAUAGAGAACCCAACGAGCCCCAA ...................(((........(((........)))(((((((((((((((....)))).)))))..)))))).....)))................. (-14.04 = -14.60 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:51 2011