| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,489,365 – 14,489,469 |
| Length | 104 |
| Max. P | 0.521819 |
| Location | 14,489,365 – 14,489,469 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 67.41 |
| Shannon entropy | 0.59346 |
| G+C content | 0.35360 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -7.25 |
| Energy contribution | -8.64 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.521819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14489365 104 - 24543557 UCCUGAAAUUCAGUUCGUAGCAAUUCUGUUUGGGUGUAUUGAAUAUUGAUAUCAAUAUCGAUAUGAUUGUGCGUAUUGAACUAAUUUCCUGCUUCGGCCAAUCG ....((((((.((((((..(((((((.....))))(((((((.(((((....)))))))))))).....)))....))))))))))))..((....))...... ( -25.20, z-score = -1.96, R) >droSim1.chr3L 13818188 102 - 22553184 UCAUCGAAUUGAGUUCGUAGCACUUCUGUUCGA--GUAUUGAAUAUUGAUAUCCAUAUCGAAAUGAUUGUGCUUAUUGAACUAAUUUCCUGCUUCGGCCAAUCG .....(((...((((((.(((((.((..(((((--((((..(...)..)))).....)))))..))..)))))...))))))...)))..((....))...... ( -24.50, z-score = -2.01, R) >droSec1.super_0 6619926 102 - 21120651 UCAUCGAAUUGAGUUCGUAGCACUUCUGUUCGG--GUAUUGAAUAUUGAUAUCAAUAUCGAAAUGAUUGUGCUUAUUGAACUAAUUUCCUGCAUCGGCCAAUCG .....(((...((((((.(((((.((..(((((--.((((((.........)))))))))))..))..)))))...))))))...)))................ ( -24.00, z-score = -1.33, R) >droYak2.chr3L 14579046 91 - 24197627 UCAUGGAAUCGAGUUCGUAGCAGUUCUGUU-------------UUUUGAUAUCAAUAUCAAAAUGAUAAUGCUUAUUGAACUAAUUUCCUGCUUCGGCCAAUCG ....((((...((((((.((((..((....-------------((((((((....)))))))).))...))))...))))))...)))).((....))...... ( -25.70, z-score = -4.00, R) >droGri2.scaffold_15053 146761 85 + 344661 -------ACGGAGAACUACGUA-UCUUAUUCUA-UAUUUUAAUUAUUAUUUCAUACGACAUCA-AAGAGUAUGCAUUAAACUUAUUGCCAGCACC--------- -------..((.......((((-(...((...(-((.......))).))...)))))....((-(.((((.........)))).)))))......--------- ( -5.40, z-score = 1.27, R) >consensus UCAUCGAAUUGAGUUCGUAGCACUUCUGUUCGA__GUAUUGAAUAUUGAUAUCAAUAUCGAAAUGAUUGUGCUUAUUGAACUAAUUUCCUGCUUCGGCCAAUCG ...........((((((.((((..(((((((((.....)))))))((((((....))))))...))...))))...))))))........((....))...... ( -7.25 = -8.64 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:51 2011