| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,485,726 – 14,485,819 |
| Length | 93 |
| Max. P | 0.922936 |
| Location | 14,485,726 – 14,485,819 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 54.76 |
| Shannon entropy | 0.73855 |
| G+C content | 0.30186 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -5.94 |
| Energy contribution | -6.14 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14485726 93 + 24543557 ----------------UUGGGUAAACAAAAAU-UGUUCAAAAGGAAAAAUAAGCUUUUUUUUAGUUUGAAAACAUUCCAAAU------CGAUGAUACCUUCUAGAAAGGUAGUACC ----------------...((((.........-..((((((..((((((.......))))))..))))))............------......((((((.....)))))).)))) ( -15.00, z-score = -0.40, R) >droAna3.scaffold_13337 18695389 78 - 23293914 --------------------------------------UACAGUAUUCUGGAAAUAUUUAUAUAUUUUAAACCACUUUUAUUACCAAGUGAUACAACCCCUUUGGGUUGUUGUAUU --------------------------------------..(((....)))(((((((....)))))))....(((((........)))))..(((((((....)))))))...... ( -16.50, z-score = -1.80, R) >droYak2.chr3L 14575267 107 + 24197627 UUGGGUAAACUCGGGGUCUACUAAAAAGAAAUGUGUACCACAAGCACAGGAAGCUUUUU---GGUUUUAAAAAAUUCCGAAU------CGAUGAUACCUUCUAGAAAGGUAUUACC ..((......(((((((..(((((((((...(((((.......))))).....))))))---)))........)))))))..------...(((((((((.....))))))))))) ( -27.00, z-score = -1.96, R) >droSec1.super_0 6616353 92 + 21120651 --------------------AUAAACAAAAAU-UGUUCAAAAAGAACAAGAAGCUUUUUU--AGUUUUAAAAUAUUCCAAAUGAUUC-CGAUGAUACCUUCUAGAAAGGCAGUACC --------------------...........(-(((((.....))))))...((((((((--((.......................-............))))))))))...... ( -13.75, z-score = -1.43, R) >droSim1.chr3L 13814513 82 + 22553184 --------------------AUAAACAAAAAU-UGUUUU-----UGUUUGAAGCCUUUUU--AGUUUUAAAACAUUCCGAAU------CGAUGAUACCUUCUAGAAAGGUUUUACC --------------------..((((((((..-...)))-----)))))(((((((((((--((........((((......------.)))).......)))))))))))))... ( -18.06, z-score = -3.27, R) >consensus ____________________AUAAACAAAAAU_UGUUCAAAAAGAACAAGAAGCUUUUUU__AGUUUUAAAACAUUCCAAAU______CGAUGAUACCUUCUAGAAAGGUAGUACC .................................................((((((.......)))))).......................(((((((((.....))))))))).. ( -5.94 = -6.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:48 2011