| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,483,903 – 14,483,980 |
| Length | 77 |
| Max. P | 0.592200 |
| Location | 14,483,903 – 14,483,980 |
|---|---|
| Length | 77 |
| Sequences | 9 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 71.63 |
| Shannon entropy | 0.54370 |
| G+C content | 0.47500 |
| Mean single sequence MFE | -14.96 |
| Consensus MFE | -8.37 |
| Energy contribution | -8.12 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14483903 77 + 24543557 ---------------CCUCUC-UAUCUCCCUCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGACGAAGGCAGC ---------------......-.............((((......((((((((((....((((.........)))))))))).)))).)))). ( -16.50, z-score = -0.89, R) >droSim1.chr3L 13812746 77 + 22553184 ---------------CCUCUC-UAUCUCCCUCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGACGAAGGCAGC ---------------......-.............((((......((((((((((....((((.........)))))))))).)))).)))). ( -16.50, z-score = -0.89, R) >droSec1.super_0 6614630 77 + 21120651 ---------------CCUCUC-UAUCUCCCUCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGACGAAGGCACC ---------------......-.......................((((((((.......))).)))))...(((((((....)))))))... ( -15.70, z-score = -1.27, R) >droYak2.chr3L 14573296 77 + 24197627 ---------------CCCGUCGCCUCCC-CCCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGGCAAAGGCAGC ---------------......((((...-((......((((.....))))(((((....((((.........)))))))))))...))))... ( -18.70, z-score = -0.98, R) >droEre2.scaffold_4784 14455519 78 + 25762168 ---------------CCUCUCACCUCCCUCUCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGACGAAGGCAAC ---------------..............................((((((((.......))).)))))...(((((((....)))))))... ( -15.70, z-score = -1.27, R) >droAna3.scaffold_13337 18693665 93 - 23293914 CAUUUCUCUUCUUCGCUUACAGGCCGUCUCUUUGUUUGUAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUUGACGGCAAUGGCGAC ............(((((.....((((((..(((((((((........(((.(.......).)))))))))))).....))))))...))))). ( -25.60, z-score = -2.41, R) >dp4.chrXR_group6 6133174 69 - 13314419 ---------------UCGUUC-UCUCUCGCUCUUCUGUUAAAUUAUUUGCGUCGAAUUAAGGCAACAAACAAGUCUUCCCCGGCG-------- ---------------......-...........................(((((....(((((.........)))))...)))))-------- ( -7.70, z-score = 0.37, R) >droPer1.super_41 195289 69 - 728894 ---------------UCGCUC-UCUCUCGCUCUUCUUCUAAAUUAUUUGCGUCGAAUUAAGGCAACAAACAAGUCUUCCCCGGCG-------- ---------------..((..-......))...................(((((....(((((.........)))))...)))))-------- ( -8.40, z-score = -0.14, R) >droVir3.scaffold_13049 3392936 59 - 25233164 ----------------------------------CCUGUAAAAUAUUUGCGUCGAAUUAAGGCAACAAACAAGCUCCCGACGGCAACAGCAAC ----------------------------------............((((((((......(((.........)))..))))(....).)))). ( -9.80, z-score = -0.54, R) >consensus _______________CCUCUC_UCUCUCCCUCUCUCUGCAAAUUAUUUGCGUCGAAUUAAGGCAGCAAACAAGUCUUCGACGGCGAAGGCAAC .....................................((((.....))))((((....(((((.........)))))...))))......... ( -8.37 = -8.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:47 2011