| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,467,730 – 14,467,785 |
| Length | 55 |
| Max. P | 0.512211 |
| Location | 14,467,730 – 14,467,785 |
|---|---|
| Length | 55 |
| Sequences | 8 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 87.86 |
| Shannon entropy | 0.24281 |
| G+C content | 0.38636 |
| Mean single sequence MFE | -10.15 |
| Consensus MFE | -9.52 |
| Energy contribution | -9.18 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14467730 55 + 24543557 CAAUUUAUCGAAUGCCCGACUGAAUGCAAUCCUAAUUAGGACAGAUUUAGAAAGG .......(((......)))((((((.(..((((....))))..)))))))..... ( -8.70, z-score = -1.13, R) >droPer1.super_41 516172 55 + 728894 GAUUCGAUGGAUUUCUUAGUUGAAUUGAAUCCUAAUUAGGACAGAUUUAGAAAGG ((((((((((....))..))))))))...((((....)))).............. ( -7.80, z-score = 0.47, R) >dp4.chrXR_group6 7163738 55 + 13314419 GAUUCGAUGGAUUUCUUAGUUGAAUUGAAUCCUAAUUAGGACAGAUUUAGAAAGG ((((((((((....))..))))))))...((((....)))).............. ( -7.80, z-score = 0.47, R) >droAna3.scaffold_13337 18678930 55 - 23293914 GAAUGUAUCGAUUGCCCGGCCGAAUCGAAUCCUAAUUAGGACAGAUUUAGAAAGG ...............((..(..((((...((((....))))..))))..)...)) ( -9.60, z-score = -0.12, R) >droEre2.scaffold_4784 14439405 55 + 25762168 GAAUUUAUCGAGUGCCCGGCUGAAUCGAAUCCUAAUUAGGACAGAUUUAGAAAGG ...............((..(((((((...((((....))))..)))))))...)) ( -13.10, z-score = -1.60, R) >droYak2.chr3L 14556943 55 + 24197627 GAAUUUAUCGAAUGCCCAGCUGAAUCGAAUCCUAAUUAGGACAGAUUUAGAAAGG ..............((...(((((((...((((....))))..)))))))...)) ( -12.20, z-score = -2.12, R) >droSec1.super_0 6598617 55 + 21120651 GAAUUUAUCGAAUGCCCGGCUGAAUCGAAUCCUAAUUAGGACAGAUUUCGAAAGG ...............((..(.(((((...((((....))))..))))).)...)) ( -8.90, z-score = 0.25, R) >droSim1.chr3L 13796604 55 + 22553184 GAAUUUAUCGAAUGCCCGGCUGAAUCGAAUCCUAAUUAGGACAGAUUUAGAAAGG ...............((..(((((((...((((....))))..)))))))...)) ( -13.10, z-score = -1.86, R) >consensus GAAUUUAUCGAAUGCCCGGCUGAAUCGAAUCCUAAUUAGGACAGAUUUAGAAAGG ...............((..(((((((...((((....))))..)))))))...)) ( -9.52 = -9.18 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:47 2011