| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,444,534 – 14,444,609 |
| Length | 75 |
| Max. P | 0.997631 |
| Location | 14,444,534 – 14,444,609 |
|---|---|
| Length | 75 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 97.87 |
| Shannon entropy | 0.03850 |
| G+C content | 0.53085 |
| Mean single sequence MFE | -18.72 |
| Consensus MFE | -17.94 |
| Energy contribution | -18.14 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.64 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.14 |
| SVM RNA-class probability | 0.997631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14444534 75 + 24543557 AGCACUUCGCCCCCGAAAAAUAAAAGUGGCUAAAAACCAGCGACCGCUUACCGUUGCUGCCACCUCCCACUUUUG .....((((....))))...(((((((((........(((((((........))))))).......))))))))) ( -18.76, z-score = -3.62, R) >droSim1.chr3L 13777692 75 + 22553184 AGCACUUCGCCCCCGAAAAAUAAAAGUGGCCAAAAACCAGCGACCGCUAACCGUUGCUGCCACCUCCCACUUUUG .....((((....))))...(((((((((........(((((((........))))))).......))))))))) ( -18.76, z-score = -3.68, R) >droSec1.super_0 6580503 75 + 21120651 AGCACUUCGCCCCCGAAAAAUAAAAGUGGCCAAAAACCAGCGACCGCUAACCGUUGCUGCCACCUCCCACUUUUG .....((((....))))...(((((((((........(((((((........))))))).......))))))))) ( -18.76, z-score = -3.68, R) >droYak2.chr3L 14538406 75 + 24197627 AGCACUUCGCCCCCGAAAAAUAAAAGUGGCCAAAAACCAGCGACCGCUAACCGUUGCUGCCACCUCCCACUUUUG .....((((....))))...(((((((((........(((((((........))))))).......))))))))) ( -18.76, z-score = -3.68, R) >droEre2.scaffold_4784 14425252 73 + 25762168 AGCACUUCGCCCC-GAAAAAUAAAAGUGGCCAAAA-CCAGCGACCGCUAACCGUUGCUGCCACCUCCCACUUUUG .....((((...)-)))...(((((((((......-.(((((((........))))))).......))))))))) ( -18.54, z-score = -3.52, R) >consensus AGCACUUCGCCCCCGAAAAAUAAAAGUGGCCAAAAACCAGCGACCGCUAACCGUUGCUGCCACCUCCCACUUUUG .....((((....))))...(((((((((........(((((((........))))))).......))))))))) (-17.94 = -18.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:46 2011