| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,436,620 – 14,436,726 |
| Length | 106 |
| Max. P | 0.805331 |
| Location | 14,436,620 – 14,436,726 |
|---|---|
| Length | 106 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.43 |
| Shannon entropy | 0.38096 |
| G+C content | 0.50324 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -20.43 |
| Energy contribution | -20.54 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14436620 106 + 24543557 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAUUCCCAAAACCGAAGGUCGUGACUGACU-CCCACAAAAUGAGCAACGGAAA- ((((....((((((((((........((((.....))))((.(((....))).))............))))))))))..))))(-((...............)))..- ( -23.86, z-score = -0.57, R) >droSim1.chr3L 13769301 106 + 22553184 GUCAUUCACACGACCUUUCAACUUAUGACUUUUCCAGUUGGCUGCUGCGGCGACCAUUCCCAAAACCGAAGGUCGUGACUGACU-CCCACAAAAUGAGCAACGGAAA- ((((....((((((((((........((((.....))))((.(((....))).))............))))))))))..))))(-((...............)))..- ( -23.86, z-score = -0.60, R) >droSec1.super_0 6572514 106 + 21120651 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAUUCCCAAAACCGAAGGUCGUGACUGACU-CCCACAAAAUGAGCAACGGAAA- ((((....((((((((((........((((.....))))((.(((....))).))............))))))))))..))))(-((...............)))..- ( -23.86, z-score = -0.57, R) >droYak2.chr3L 14530305 106 + 24197627 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAACCCGAAGGUCGUGACUGACU-CCCACAAAAUGAGCAACGGAAA- ((((.((((..((....)).......(((((((....((((..((((.(....))))).))))....))))))))))).))))(-((...............)))..- ( -27.56, z-score = -1.21, R) >droEre2.scaffold_4784 14417052 106 + 25762168 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAAACCGAAGGUCGUGACUGACU-CCCACAAAAUGAGCAACGGAAA- ((((.((((..((....)).......(((((((....((((..((((.(....))))).))))....))))))))))).))))(-((...............)))..- ( -27.56, z-score = -1.26, R) >dp4.chrXR_group6 7137897 96 + 13314419 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCAGCUGCGGCGAUCAGUCCGGGCAGCGAAGGUCGUGACUGACU-CCCACAAAAAUA----------- ((((....(((((((((((((((...(.....)..)))))...((((((((.....)))...)))))))))))))))..)))).-............----------- ( -30.90, z-score = -2.28, R) >droPer1.super_41 489961 96 + 728894 GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCAGCUGCGGCGAUCAGUCCGGGCAGCGAAGGUCGUGACUGACU-CCCACAAAAAUA----------- ((((....(((((((((((((((...(.....)..)))))...((((((((.....)))...)))))))))))))))..)))).-............----------- ( -30.90, z-score = -2.28, R) >droVir3.scaffold_13049 21890723 101 + 25233164 GCCUUUCACACGACCUUUCAACUCCAGACUCGCAUAUUUGGUCUUUUUUGGGA--AUU-----GAGCCAGGGUCGUGACCAGCUGCCUGUUAUUGUUGUAGCUGAAAA ........(((((((((((((.((((((((.........)))))......)))--.))-----))...)))))))))..(((((((...........))))))).... ( -30.40, z-score = -1.99, R) >consensus GUCAUUCACACGACCUUUCAACUUAUGACUUUCCCAGUUGGCUGCUGCGGCGACCAGUCCCAAAACCGAAGGUCGUGACUGACU_CCCACAAAAUGAGCAACGGAAA_ ((((....((((((((((........((((.....))))((.(((....))).))............))))))))))..))))......................... (-20.43 = -20.54 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:45 2011