| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,433,621 – 14,433,716 |
| Length | 95 |
| Max. P | 0.726146 |
| Location | 14,433,621 – 14,433,716 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.95 |
| Shannon entropy | 0.42549 |
| G+C content | 0.49750 |
| Mean single sequence MFE | -30.66 |
| Consensus MFE | -17.78 |
| Energy contribution | -20.22 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14433621 95 - 24543557 AAAACACAAUCCAGUAUAGCAAUGGAUGGAUCGGCUAG------------GACGGGCUGUGGGCUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUAUAUUUUU .((((((.(((((...((....))..)))))(((((..------------....)))))...((((((.(((((...))))).))))))))))))............ ( -31.40, z-score = -2.41, R) >droAna3.scaffold_13337 18652307 82 + 23293914 AAAACACCAUCCAGUAUGGCAGUGGAUAGAUCAGAA--------------AAAGGGGCAUGGGGU-----------GCUCCUGCUGUGUGUGUGCUGGUGUGUCUGG ..........((((((((.(((((.(((.(.(((..--------------..((((((((...))-----------)))))).)))).))).))))).)))).)))) ( -29.50, z-score = -2.03, R) >droEre2.scaffold_4784 14414068 95 - 25762168 AAAACACAAUCCAGCACAGCAAUGGAUAGAUCGGCUGA------------GGCGGGCUGUGGGUUCGGGAGGAGCAACUCCUGCUGAGUGUGUUUCUAUAUAUUUGU .(((((((......((((((....((....)).((...------------.))..))))))..(((((.(((((...))))).))))))))))))............ ( -28.80, z-score = -0.78, R) >droYak2.chr3L 14527251 107 - 24197627 AAAACACAAUCCAGUACAGCAGUGGAUAGAUCGGCUGAGGGGCUGAGGGGGGCGGGCUGUGGGCUCGGGGGGAGUAACUCCUGCUGAGUGUGUUUCUAUAGAUUUUU .((((((.......((((((.((.......((((((....)))))).....))..)))))).((((((.(((((...))))).))))))))))))............ ( -37.10, z-score = -1.57, R) >droSim1.chr3L 13766310 95 - 22553184 AAAACACAAUCCAGUAAAGCAAUGGAUGGAUCGGCUAG------------GACGGGCUGUGGGAUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUACAUUUUU .((((((((((((.........)))))....(((((..------------....))))).....((((.(((((...))))).)))).)))))))............ ( -26.50, z-score = -1.04, R) >consensus AAAACACAAUCCAGUACAGCAAUGGAUAGAUCGGCUAA____________GACGGGCUGUGGGCUCGGGAGGAGUAACUCCUGCUGAGUGUGUUUCUAUAUAUUUUU .((((((((((((.........)))))...(((((.................(((((.....)))))((((......)))).))))).)))))))............ (-17.78 = -20.22 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:44 2011