| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,428,941 – 14,428,995 |
| Length | 54 |
| Max. P | 0.947676 |
| Location | 14,428,941 – 14,428,995 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 88.70 |
| Shannon entropy | 0.20669 |
| G+C content | 0.31325 |
| Mean single sequence MFE | -11.74 |
| Consensus MFE | -10.86 |
| Energy contribution | -10.18 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14428941 54 - 24543557 CCAAUAUUAUUGGUUUGUUGCAUAAACUAAUAAUUUGGUAGCCGGAUCAAUGAA ((((.(((((((((((((...)))))))))))))))))................ ( -12.60, z-score = -2.04, R) >droSim1.chr3L 13761600 54 - 22553184 UCAAUAUUAUUGGUUUGUUGCAUAAACUAAUGAUUUGGUAGCCGGAUCAAUGAU (((.....((((((((((...))))))))))(((((((...)))))))..))). ( -12.30, z-score = -1.87, R) >droSec1.super_0 6564953 54 - 21120651 UCAAUAUUAUUGGUUUGUUGCAUAAACUAAUAAUUUGGUAGCCGGAUCAAUGAC ......(((((((((((..((....(((((....))))).))))))))))))). ( -11.10, z-score = -1.74, R) >droYak2.chr3L 14522413 52 - 24197627 --AAUAUUAUUGGUUUGUUGCAUAAGCUAAUUACUUGGUAGCCGAAUCAAUAAU --...((((((((((((((((.((((.......)))))))).)))))))))))) ( -13.90, z-score = -2.91, R) >droEre2.scaffold_4784 14409386 54 - 25762168 CCAACAUUAUUGGUUUGUUGUAUAAACUAAUUAUUUGGUAGCCGGAUCCAUAGU ((((....((((((((((...))))))))))...))))................ ( -8.80, z-score = -0.21, R) >consensus CCAAUAUUAUUGGUUUGUUGCAUAAACUAAUAAUUUGGUAGCCGGAUCAAUGAU ......(((((((((((..((....(((((....))))).))))))))))))). (-10.86 = -10.18 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:43 2011