Locus 7373

Sequence ID dm3.chr3L
Location 14,417,705 – 14,417,782
Length 77
Max. P 0.629565
window10154

overview

Window 4

Location 14,417,705 – 14,417,782
Length 77
Sequences 4
Columns 77
Reading direction forward
Mean pairwise identity 93.72
Shannon entropy 0.09973
G+C content 0.36039
Mean single sequence MFE -13.42
Consensus MFE -10.01
Energy contribution -10.45
Covariance contribution 0.44
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.629565
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14417705 77 + 24543557
CAAGUGGAAAAGUACACAAACAGAUCGGAUGGAAAUACAAUAUGGUUAAAAGGGAAACCAAGCUAAAAAUCGAGUGU
...(((........)))..(((..((((.((......))...(((((....((....)).)))))....)))).))) ( -12.70, z-score =  -2.08, R)
>droSec1.super_0 6553758 77 + 21120651
CAAGUGGAAAAGUACACAAACAGAUCGGAUGGAAAUACAAUAUGGUUAAAAGGGAAACCACGCUAAAAAUAGAGUGU
...(((........))).....(((((..((......))...)))))....((....))(((((........))))) ( -13.60, z-score =  -2.62, R)
>droYak2.chr3L 14511086 77 + 24197627
CAAGUGGAAAAGUACACAAACAGAUCGGAUAGAAAUACAAUAUGGUUAAGAGGGAAACCAAACUAAAUACCGAGUGU
...(((........)))..(((..((((.((....)).....(((((....((....)).)))))....)))).))) ( -14.90, z-score =  -2.89, R)
>droEre2.scaffold_4784 14398219 77 + 25762168
CAAGUGGAAAAGUACACAAACAGAUCGGAUGGAAAUAUAAUAUGGUUAAAAGGGAAACCUCACUAAAAAUCGAGUGU
...(((........)))..(((..((((((....))......((((....(((....))).))))....)))).))) ( -12.50, z-score =  -1.51, R)
>consensus
CAAGUGGAAAAGUACACAAACAGAUCGGAUGGAAAUACAAUAUGGUUAAAAGGGAAACCAAACUAAAAAUCGAGUGU
...(((........)))..(((..((((.((......))...(((((....((....)).)))))....)))).))) (-10.01 = -10.45 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:42 2011