| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,390,802 – 14,390,893 |
| Length | 91 |
| Max. P | 0.663766 |
| Location | 14,390,802 – 14,390,893 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 71.58 |
| Shannon entropy | 0.60478 |
| G+C content | 0.43566 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -9.75 |
| Energy contribution | -9.11 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14390802 91 - 24543557 CUUUCAAAUAAGAUUUUCCAUUGAAAUGGAGCAUGAAAGAGGUUAGUUCGUUGGUUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG ................(((((....)))))((((((..((((..(((.(((((((.........)))))))))).)))).)))).)).... ( -21.00, z-score = -1.31, R) >droSim1.chr3L 13731767 91 - 22553184 CUUUAAAAUAAGAUUUUCCACUGAAAAGGAGCAGGAAAGAGGUUAGUUCGUUGGUUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG ..................(((((......(((((....((((((((........))))))))))))).(((((......)))))..))))) ( -20.10, z-score = -0.49, R) >droSec1.super_0 6527124 91 - 21120651 CUUUAAAAUAAGAUUUUCCACUGAAAAGGAGCAGGAAAGAGGUUAGUUCGUUGGUUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG ..................(((((......(((((....((((((((........))))))))))))).(((((......)))))..))))) ( -20.10, z-score = -0.49, R) >droYak2.chr3L 14482189 70 - 24197627 ---------------------CUUUAAGAAGCAUGAAAGAGGUUAGUUCGUCGGCUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG ---------------------.........((....(((((((((((......)))))))))))....(((((......))))).)).... ( -19.50, z-score = -1.95, R) >droEre2.scaffold_4784 14370939 91 - 25762168 AUUUAAAAUACGAUUUUCCCCGGGAAAGAAGCAUGGAAGAGGUUAGUUCGUUGGCUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG .........((((((((((...)))))((((((((((((((((((((......))))))))))).)).))).))))...)))))....... ( -25.20, z-score = -1.75, R) >droAna3.scaffold_13337 18612936 81 + 23293914 CUCUGAGGUAUG-UGAUCUCCUGCAAAGGCACACGAAAGGGGUCACUUCUCGGGCUAACCUUUCGCUAAUGACUUCCUUGUC--------- .(((((((...(-(((((((((....)))....(....)))))))).)))))))................(((......)))--------- ( -20.50, z-score = -0.49, R) >dp4.chrXR_group6 7068185 88 - 13314419 UUUUCCACAAUGUUUUUCCAGCCACAUGGAA---AAGGGGGGUCAGUUCCUUGGCUAACCUCUGGCUAAUGACUUCCUUGUCGACGUUUUG .....((.((((((((((((......)))))---)((((((((((.....(((((((.....)))))))))))))))))...)))))).)) ( -26.70, z-score = -1.84, R) >droPer1.super_41 432001 88 - 728894 UUUUCCACAAUGUUUUUCCAGCCACAUGGAA---AAGGGGGGUCAGUUCCUUGGCUAACCUCUGGCUAAUGACUUCCUUGUCGACGUUUUG .....((.((((((((((((......)))))---)((((((((((.....(((((((.....)))))))))))))))))...)))))).)) ( -26.70, z-score = -1.84, R) >consensus CUUUAAAAUAAGAUUUUCCACUGAAAAGGAGCAUGAAAGAGGUUAGUUCGUUGGCUAACCUUUUGCUAAUGACUUCCUUGUCGUCGCAGUG .....................................((((((.(((......))).))))))(((...((((......))))..)))... ( -9.75 = -9.11 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:41 2011