| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,371,457 – 14,371,528 |
| Length | 71 |
| Max. P | 0.823135 |
| Location | 14,371,457 – 14,371,528 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 67.62 |
| Shannon entropy | 0.58767 |
| G+C content | 0.57016 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -13.16 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14371457 71 + 24543557 CUGGCCAGGAAGUUUA--UUUUUCGGAUCGGGGCUGAGUCCGGUCCUUGGCCCUUCGGGUUCGUCCUGAACAG--------- ..((((((((((....--..))))((((((((......)))))))))))))).((((((.....))))))...--------- ( -28.90, z-score = -1.86, R) >droEre2.scaffold_4784 14354055 69 + 25762168 CUGGCCAGGAAGUUU---UUAUUUGGAU-GGGGCUGAGUCCGGGCCUUGGCCCUUCGGGUUCGUCCUGAGCAG--------- ...((((((((((((---(.........-))))))((..((((((....))))...))..)).))))).))..--------- ( -25.00, z-score = -0.17, R) >droYak2.chr3L 14463282 59 + 24197627 CUGGGCAGGAAGUUUAU-UUUUUUGGAUCGGGG-------------UUGGUCCUUCGGGUUCGUCCUGAACAG--------- (((..(((((.....((-((....((((((...-------------.))))))...))))...)))))..)))--------- ( -17.20, z-score = -1.14, R) >droSec1.super_0 6508103 71 + 21120651 CUGGCCAGGAAGUUUA--UUUUUCGGAUCGGGGCUGAGUCCGGUCCUUGGACCUUCGGGUUCGUCCUGAACAG--------- (((..(((((......--......((((((((......))))))))..(((((....))))).)))))..)))--------- ( -32.20, z-score = -3.13, R) >droSim1.chr3L 13718879 71 + 22553184 CUGGCCAGGAAGUUUA--UUUUUCGGAUCGGGGCUGAGUCCGGUCCUUGGCCCUUCGGGUUCGUCCUGAACAG--------- ..((((((((((....--..))))((((((((......)))))))))))))).((((((.....))))))...--------- ( -28.90, z-score = -1.86, R) >droGri2.scaffold_15110 2967288 80 - 24565398 CCGGCCACACCAUGCAUCCAUCUUCAGUCUGGGCCGGAAUGAAAAGCCGA--CUCGGAGGACGGCCAUGGGAGUUGUUUGGG (((((.((.(((((...((.(((....((((((.(((.........))).--))))))))).)).)))))..)).).)))). ( -23.20, z-score = 1.08, R) >consensus CUGGCCAGGAAGUUUA__UUUUUCGGAUCGGGGCUGAGUCCGGUCCUUGGCCCUUCGGGUUCGUCCUGAACAG_________ (((..(((((...........((((((...((((((((.......))))))))))))))....)))))..)))......... (-13.16 = -14.13 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:40 2011