| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,354,104 – 14,354,209 |
| Length | 105 |
| Max. P | 0.540456 |
| Location | 14,354,104 – 14,354,209 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 96.57 |
| Shannon entropy | 0.05762 |
| G+C content | 0.40381 |
| Mean single sequence MFE | -15.86 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14354104 105 + 24543557 AACCACUACAAUUUCCUCUCUUAACACGACUAACAAAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGGGCAAAACUUGGU .((((......................((..((((.....))))...))........(((((((.....))))))).((((.(........))))).....)))) ( -16.90, z-score = -1.79, R) >droEre2.scaffold_4784 14336364 105 + 25762168 AACCACUACAAUUCCCUCUCUUAACACGACUAACAAAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGU ......................................((.((((............(((((((.....))))))).((((..........).))))))).)).. ( -15.10, z-score = -1.77, R) >droYak2.chr3L 14444656 105 + 24197627 AACCACUACAAUUCCCUCUCUUAACACGACUAACACAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGU ......................................((.((((............(((((((.....))))))).((((..........).))))))).)).. ( -15.10, z-score = -1.75, R) >droSec1.super_0 6491066 105 + 21120651 AACCACUACAACUUCCUCUCUUAACACGACUAACAAAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGU .((((......................((..((((.....))))...))........(((((((.....))))))).(((.((........))))).....)))) ( -16.10, z-score = -2.31, R) >droSim1.chr3L 13701513 105 + 22553184 AACCACUACAAUUUCCUCUCUUAACACGACUAACAAAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGU .((((......................((..((((.....))))...))........(((((((.....))))))).(((.((........))))).....)))) ( -16.10, z-score = -2.22, R) >consensus AACCACUACAAUUUCCUCUCUUAACACGACUAACAAAACAUGUUCAUUCAACAAUCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGU .((((......................((..((((.....))))...))........(((((((.....))))))).((((..........).))).....)))) (-13.08 = -13.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:39 2011