| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,331,819 – 14,331,912 |
| Length | 93 |
| Max. P | 0.543967 |
| Location | 14,331,819 – 14,331,912 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 73.08 |
| Shannon entropy | 0.51593 |
| G+C content | 0.51377 |
| Mean single sequence MFE | -32.07 |
| Consensus MFE | -11.73 |
| Energy contribution | -12.80 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14331819 93 - 24543557 AAGCGCG---CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCCAAGGCAUUUUACAGGGGUG------GUGGGAAAAGGUGUGAGGGGUAUGUUGGAA .......---((((((..(((((..((((((.((((.((((.(((....)))........)))).)------))).))))))..)))))..)..)))))... ( -34.20, z-score = -1.89, R) >droSim1.chr3L 13677991 93 - 22553184 AAGCGCG---CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCAAAGGCAUUUUACAGGGGUG------GUGGGAAAAGGUGUGAGGGGGUUGUUGAAA ......(---((((.(..(((((..((((((.((((.((((.(((....)))........)))).)------))).))))))..)))))..))))))..... ( -35.10, z-score = -2.58, R) >droSec1.super_0 6468675 93 - 21120651 AAGCGCG---CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCCAAGGCAUUUUACAGGGGUG------GUGGGAAAAGGUGAGAGGGGGUUGUUGAAA ..((...---..)).((((..((.(((((((((..(((((((.((((..(........)..))).)------.)))))))..))))))))).))....)))) ( -32.50, z-score = -1.32, R) >droYak2.chr3L 14421608 99 - 24197627 AAGCGCG---CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCCAAGGCAUUUUACAGGGGGGGAGGGUCUGGGAAAAGGUGUGAGGGGGGUGCUAAAA .(((((.---((((((.....)))))(((((((((((((((((((((..(........)..)))).......)))))))..))))))))))).))))).... ( -39.11, z-score = -2.09, R) >droEre2.scaffold_4784 14314109 92 - 25762168 AAGCGCG---CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCCAAGGCAUUUUACAGGGGG-------CUGGGAAAAGGUGUGAGGGGGGUGCUAAAA .(((((.---((((((.....)))))(((((((((((((((((((((..(........)..))))-------)))))))..))))))))))).))))).... ( -47.10, z-score = -5.43, R) >droAna3.scaffold_13337 18558056 78 + 23293914 AAGCGCGGCCUGGCCUUUCUUGUGUCUUUUCACACUUUCCCGGCCC-AAGGCAU----CAAAAGU------UGUGGAAAAAAGAACGAA------------- .......((((((((......((((......))))......)))).-.))))..----.....((------(.(.......).)))...------------- ( -17.30, z-score = 0.81, R) >droVir3.scaffold_13049 22001592 77 - 25233164 ----GCG---CGGCCUUU-UUAUGU-UUUUCACACUUUUCACG-----AAGCGU-UUGAAUAAGUUGGGGUAAGAGAACAAGGGGCGGCGGG---------- ----.((---(.((((((-(..(.(-((..((.((((((((..-----......-.)))).))))))..).)).)....))))))).)))..---------- ( -19.20, z-score = -0.58, R) >consensus AAGCGCG___CGGCAUUUCUUAUGUCUUUUCACACUUUCCCGGCCCCAAGGCAUUUUACAGGGGUG______GUGGGAAAAGGUGUGAGGGGG_UGUUGAAA ....((......))...........((((((.(((((((((((((....)))......(....).........)))))..))))).)))))).......... (-11.73 = -12.80 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:37 2011