| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,328,231 – 14,328,324 |
| Length | 93 |
| Max. P | 0.550112 |
| Location | 14,328,231 – 14,328,324 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 73.31 |
| Shannon entropy | 0.53117 |
| G+C content | 0.46619 |
| Mean single sequence MFE | -17.23 |
| Consensus MFE | -9.19 |
| Energy contribution | -9.33 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14328231 93 + 24543557 UUUGUCUAAUGAAUUUCCACGUGCCAUCACCAUUUCUCCUUACUUGUUC---AGCCGAAAAGCCUGCCUUCAU-UUUUGUAUGCGGUACGUGCCUGU .................((((((((.....................(((---....)))..((.(((......-....))).))))))))))..... ( -15.50, z-score = -0.64, R) >droSim1.chr3L 13674423 96 + 22553184 UUUGUCUAAUGAAUUUCCACGUGCCAUCACCAUUUCUCCUUACUCGUGUUCAGCCGAGAAAGCCUGCCUUCAU-UUUUGUAUGCGGUACGUGCCUGU .................((((((((.............(((.((((.(.....))))).)))...((...((.-...))...))))))))))..... ( -20.80, z-score = -1.74, R) >droSec1.super_0 6465163 96 + 21120651 UUUGUCUAAUGAAAUUCCACGUGCCAUCACCAUUUCUCCUUACUCGUGUUCAGCCGAGAAAGCCUGCCGUCAU-UUUUGUAUGCGGUACGUGCCUGU .................((((((((.............(((.((((.(.....))))).)))...((...((.-...))...))))))))))..... ( -20.80, z-score = -1.32, R) >droYak2.chr3L 14418110 71 + 24197627 UUUGUCUAAUGAAUUUCCACGUGCCAUCACCGUUUCUUCU-------------------------GCCUUCAU-UUUUGUAUGCGGUACGUGCCUGU .................((((((((......(......).-------------------------((...((.-...))...))))))))))..... ( -12.80, z-score = -1.51, R) >droEre2.scaffold_4784 14310525 92 + 25762168 UUUGUCUAAUGAAUUUCCACGUGCCAUCACCAUUUCCCCUGACUCUUUC----AACUGGAAGGCUGCCUUCAU-UUUUGUAUGCGGUACGUGCCUGU .................((((((((.......(((((..(((.....))----)...)))))...((...((.-...))...))))))))))..... ( -19.10, z-score = -1.03, R) >droAna3.scaffold_13337 18554794 97 - 23293914 UUCCUCUAAUGAAUUUCCACGUGUCGACACCGCCCUCUCAGUCUAUCUCUUUCGGCUUUUAUCGCCCCGUCUCACUCCGUUUGCGGUACGUGCCUGC .................((((((..(((...((......((((..........))))......))...))).....(((....)))))))))..... ( -14.40, z-score = 0.10, R) >consensus UUUGUCUAAUGAAUUUCCACGUGCCAUCACCAUUUCUCCUUACUCGUUC____CCCAGAAAGCCUGCCUUCAU_UUUUGUAUGCGGUACGUGCCUGU .................((((((((....................((......))..........((...((.....))...))))))))))..... ( -9.19 = -9.33 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:34 2011