| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,311,748 – 14,311,810 |
| Length | 62 |
| Max. P | 0.557976 |
| Location | 14,311,748 – 14,311,810 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 77.37 |
| Shannon entropy | 0.40812 |
| G+C content | 0.41718 |
| Mean single sequence MFE | -14.52 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.04 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14311748 62 + 24543557 GCCAGAAUAUCCUGGCAAGUGUCAGGA---CAUGAGUUUUAGGAUUUGGUAAUCAAAGCAAUACU (((((......)))))..((((....)---)))..((((...((((....)))).))))...... ( -13.70, z-score = -0.98, R) >droSec1.super_0 6449130 62 + 21120651 GCCAAAAUAUCCUGGCAAGUGUCAGGA---CAUGAGUUGUAGGAUUUGCUAAUCAAGACAAUACU .........(((((((....)))))))---.....(((((..((((....))))...)))))... ( -16.30, z-score = -2.02, R) >droSim1.chr3L 13658435 62 + 22553184 GCCGGAAUAUCCUGGCAAGUGUCAGGA---CAUAAGUUGUAGGAUUUGGUAAUCAAAGCAAUACU .........(((((((....)))))))---.....(((((..((((....))))...)))))... ( -15.50, z-score = -1.68, R) >droEre2.scaffold_4784 14293888 52 + 25762168 GCCAGAAUAUCCUGGCAAGUGUCAGGA---CGUGAGUUAUAGGAUUUGGCCAUCA---------- ((((((...(((((((....)))))))---(....)........)))))).....---------- ( -18.60, z-score = -2.90, R) >droYak2.chr3L 14401414 58 + 24197627 -------UAUCAUGCCAAGUGUCAGGAUCCCAUGAGUUAUAGGAUUUACGAAUCAAAGGUAUACU -------....(((((.....((.((((((.(((...))).))))))..))......)))))... ( -8.50, z-score = 0.24, R) >consensus GCCAGAAUAUCCUGGCAAGUGUCAGGA___CAUGAGUUAUAGGAUUUGGUAAUCAAAGCAAUACU .........(((((((....)))))))...............((((....))))........... ( -8.44 = -9.04 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:33 2011