| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,295,524 – 14,295,576 |
| Length | 52 |
| Max. P | 0.886372 |
| Location | 14,295,524 – 14,295,576 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 69.15 |
| Shannon entropy | 0.54004 |
| G+C content | 0.43132 |
| Mean single sequence MFE | -12.55 |
| Consensus MFE | -5.48 |
| Energy contribution | -5.30 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14295524 52 + 24543557 ------------AAUAAAGAUAGAUC-GAUGGAUCGGCGAAUAGAUCUAUCGACCAGAGAGACAG ------------..........(.((-((((((((........)))))))))).).......... ( -14.70, z-score = -3.27, R) >droEre2.scaffold_4784 14282236 52 + 25762168 ------------AAUAAAGAUAGAUC-GAUGGAUCGGCGGAUAGAUCUUUCGGCCAGAGAGACAG ------------..........((((-....))))(((.((........)).))).......... ( -11.80, z-score = -1.16, R) >droYak2.chr3L 14389587 52 + 24197627 ------------AAUAAAGAUAGAUC-GAUGGAUCGGCGGAUAGAUCUUUCGGGCAGGGAGACUG ------------..........(..(-((.(((((........))))).)))..).((....)). ( -12.90, z-score = -1.84, R) >droSec1.super_0 6437618 52 + 21120651 ------------AAUAAAGAUAGAUC-GAUGGAUCGGCGAAUAGAUCUAUCGACCAGAGAGACAG ------------..........(.((-((((((((........)))))))))).).......... ( -14.70, z-score = -3.27, R) >droSim1.chr3L 13646652 52 + 22553184 ------------AAUAAAGAUAGAUC-GAUGGAUCGGCGAAUAGAUCUAUCGACCAGAGAGACAG ------------..........(.((-((((((((........)))))))))).).......... ( -14.70, z-score = -3.27, R) >droVir3.scaffold_13049 3190166 65 - 25233164 GUUCAUUAAAGGUACCUCAACAAGCCCAAUGGAAAAGCUAGUAUAACUUUUGUACAACUUGGCAG .((((((...(((..........))).))))))...(((((((((.....)))))....)))).. ( -8.70, z-score = 0.57, R) >apiMel3.Group15 4156884 52 + 7856270 ------------AAUAACGAUGAAAC-GUUGGAUCAACGAGUGGAUCCAUCGAAUAUAGCGAUGG ------------.....((......(-(.((((((........)))))).)).......)).... ( -10.32, z-score = -0.84, R) >consensus ____________AAUAAAGAUAGAUC_GAUGGAUCGGCGAAUAGAUCUAUCGACCAGAGAGACAG ...........................((.(((((........))))).)).............. ( -5.48 = -5.30 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:33 2011