| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,271,183 – 14,271,282 |
| Length | 99 |
| Max. P | 0.786131 |
| Location | 14,271,183 – 14,271,282 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 59.72 |
| Shannon entropy | 0.87319 |
| G+C content | 0.42843 |
| Mean single sequence MFE | -19.01 |
| Consensus MFE | -6.87 |
| Energy contribution | -6.58 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.786131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14271183 99 + 24543557 ---UCGGACUGAUUCUCUUUCACUUCA-----CCCCCUCUAAAUGCGUCGAAAGCGUUC-UAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA---- ---..(((.(((.......))).))).-----.....(((((((.(((..(((((.(((-.....))))))))..))).))))).)).....................---- ( -17.20, z-score = -0.91, R) >droSim1.chr3L 13622973 98 + 22553184 ---UCGGUCUGAUUCUCUUUCACUUC------ACCCCUCUAAAUGCGUCGAAAGCGUUC-UAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA---- ---..((..(((............))------)..))(((((((.(((..(((((.(((-.....))))))))..))).))))).)).....................---- ( -17.50, z-score = -0.97, R) >droSec1.super_0 6413927 98 + 21120651 ---UCGGUCUGAUUCUCUUUCACUUC------ACCCCUCUAAAUGCGUCGAAAGCGUUC-UAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA---- ---..((..(((............))------)..))(((((((.(((..(((((.(((-.....))))))))..))).))))).)).....................---- ( -17.50, z-score = -0.97, R) >droYak2.chr3L 14365127 104 + 24197627 ---UCGGACUGAUUCUCUUUCACUUCCACUUCGCCCCUCUAAAUGCGUCGAAAGCGUUC-UAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA---- ---..(((.(((.......)))..)))..........(((((((.(((..(((((.(((-.....))))))))..))).))))).)).....................---- ( -18.10, z-score = -0.84, R) >droEre2.scaffold_4784 14258052 98 + 25762168 ---UCGGACUGAUUCUCUUUCACUUC------GCCCCUCUAAAUGUGUCGAAAGCGUUC-UAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA---- ---.((((.(((.......))).)))------)....(((((((.(((..(((((.(((-.....))))))))..))).))))).)).....................---- ( -15.80, z-score = -0.15, R) >droAna3.scaffold_13337 18506108 78 - 23293914 -------------------CCGAAAC-------CGACUCGCCCUGCGUCAAAAGCGUUC-CAAAUGAGGCUUUUAAUGGUUUUACGAUUUCCUGAACAAUCCCCC------- -------------------..(((((-------((((.(.....).)))((((((.((.-.....)).))))))...))))))......................------- ( -13.90, z-score = -0.56, R) >droPer1.super_41 414481 76 - 728894 -------------------AUGGGGAUAGAGCCGUCCUCUAAAUGCGUCAAAAGCGUCC-CAAAUGAGGCUUUUAAUGGUUUUACACAAACCCCCG---------------- -------------------..((((.(((((.....)))))....(((.((((((.((.-.....)).)))))).))).............)))).---------------- ( -21.60, z-score = -2.08, R) >dp4.chrXR_group6 6360925 76 - 13314419 -------------------AUGGGGAUAGAGCCGUCCUCUAAAUGCGUCAAAAGCGUCC-CAAAUGAGGCUUUUAAUGGUUUUACACAAGCCCCCG---------------- -------------------..((((.(((((.....)))))....(((.((((((.((.-.....)).)))))).))).............)))).---------------- ( -21.60, z-score = -1.70, R) >droWil1.scaffold_180949 2810581 94 - 6375548 --------------UCAAUGAAACUCAGUCACUGGCUCCUAAAUGCGUCAAAAGCGUUC-UAAAUGAGGCUUUUAAUGGUUUUACGAAUUUCUAUACAAAGUGAACUUG--- --------------.....((((.(((((.....)))........(((.((((((.(((-.....))))))))).))).......)).))))......(((....))).--- ( -13.90, z-score = 0.36, R) >droVir3.scaffold_13049 22069508 106 + 25233164 UCGCACGCUUCGUCUC--GUCUCGUCUCGUUUGCCUAGCGAAAUGCGUCAAAAGCGUUU-CAAAUGAGCCUUUUAAUGGGUUUACGAUUUUCCAUACAACAACAGCAAC--- ..((..(((..((..(--(........))...))..)))(((((((.......))))))-)...(((((((......)))))))....................))...--- ( -22.10, z-score = -0.34, R) >droMoj3.scaffold_6680 16651608 109 + 24764193 CCCAAUGAAUUAUCCGGCGUCUCGUCUCGUCUGGCU---AAAAUGCGUCAAAAGCGUUUUCAAAUGAGCCUUUUAAUGGGUUUACGAUUUUACCCAUGCUUCCCCGCGCUCC .....(((((((.((((((........)).)))).)---))(((((.......)))))))))...((((......((((((..........))))))((......)))))). ( -24.50, z-score = -0.96, R) >droGri2.scaffold_15110 3081537 105 - 24565398 ACACUUACCUCGUCA---GUCUCGACUCGUCAGGCUGCUAAAAUGCGUCAAAAGCGUUU-CAAAUGAGGCUUUUAAUGUAUUUGUGAUUUUCCAUAUAACAACAACGAA--- .(((.......(.((---((((.((....)))))))))..((((((((.((((((.((.-.....)).)))))).))))))))))).......................--- ( -24.40, z-score = -2.07, R) >consensus ___UCGG_CUGAUUCU__UUCACGUCU_____GCCCCUCUAAAUGCGUCAAAAGCGUUC_CAAAUGAGGCUUUUAAUGGAUUUACGAUUUCCUAAACAACCAAACUGA____ .............................................(((.((((((.((.......)).)))))).))).................................. ( -6.87 = -6.58 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:29 2011