| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,229,082 – 5,229,176 |
| Length | 94 |
| Max. P | 0.871334 |
| Location | 5,229,082 – 5,229,176 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.56 |
| Shannon entropy | 0.48157 |
| G+C content | 0.47661 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -14.55 |
| Energy contribution | -15.66 |
| Covariance contribution | 1.10 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5229082 94 - 23011544 UUGCCCAAACGAAGGCGAGGGCAGAUUGGGGAUAGUCCAUAUGCC-AAAUUGUGUCAGACAC--AAAUCUGACCAUUAGC--------AUCGACCAUCUGCUCAU---- (((((........)))))((((((((.((((.....))..((((.-....((.((((((...--...))))))))...))--------))...))))))))))..---- ( -32.60, z-score = -3.11, R) >droPer1.super_1 8468006 105 - 10282868 UUGCCGGA---AAGAAGAGGCAAGGGGCGAGAGAGUCCAUAAGCCAAAAUUGUGUC-GAGACAUAAAUCUGGCCAUCUGCUCAUUUGUAGAGAAAAACUUCUCCUAAUC ..((((((---.......(((...((((......))))....)))....((((((.-...)))))).))))))..(((((......))))).................. ( -29.50, z-score = -1.57, R) >dp4.chr4_group3 7015747 105 - 11692001 UUGCCGGA---AAGAAGAGGCAAGGGGCGAGAGAGUCCAUAAGCCAAAAUUGUGUC-GAGACAUAAAUCUGGCCAUCUGCUCAUUUGUAGAGAAAAACUUCUCCUAAUC ..((((((---.......(((...((((......))))....)))....((((((.-...)))))).))))))..(((((......))))).................. ( -29.50, z-score = -1.57, R) >droEre2.scaffold_4929 5308000 101 - 26641161 UUGCCCGAGUGAAGGAGAGGGCAGAUUGGGGAUAGUCCAUAUGCC-AAAUUGUGUCAGCCAC--AAAUCUGACCAUUGGC-GACCAUGAGCGACCAUCUGCUCAU---- ((((((............))))))..(((((.....))...((((-((..((.(((((....--....))))))))))))-).)))((((((......)))))).---- ( -33.00, z-score = -1.26, R) >droYak2.chr2L 8354452 94 + 22324452 UUGCCCGAGUGAAGGAGAGGGCAGAUUGGGGAUAGUCCAUAUGCC-AAAUUGUGUCAGACAC--AAAUCUGACCAUUAGC--------AUCGACCAUCUGCUCAU---- ....((.......))...((((((((.((((.....))..((((.-....((.((((((...--...))))))))...))--------))...))))))))))..---- ( -28.50, z-score = -1.37, R) >droSec1.super_5 3309890 84 - 5866729 ------------UUGCGAGGGCAGAUUGGGGCUAGUCCAUAUGCC-AAAUUGUGUCAGGCACAGAAAUCUGGCCAUUAGC--------AUCGACCAUCUGCUCAU---- ------------......((((((((.((.((((((.((((....-....))))...(((.(((....))))))))))))--------.....))))))))))..---- ( -30.20, z-score = -2.05, R) >droSim1.chr2L 5027610 96 - 22036055 UUGCCCAAGUGAAGGCGAGGGCAGAUUGGGGCUAGUCCAUAUGCC-AAAUUGUGUCAGAUACAAAAAUCUGACCAUUAGC--------AUCGACCAUCUGCUCAU---- (((((........)))))((((((((.(((((..........)))-....((.(((((((......))))))))).....--------.....))))))))))..---- ( -33.70, z-score = -2.95, R) >consensus UUGCCCGA__GAAGGAGAGGGCAGAUUGGGGAUAGUCCAUAUGCC_AAAUUGUGUCAGACACA_AAAUCUGACCAUUAGC________AUCGACCAUCUGCUCAU____ ..................((((((((.((.............((......((.((((((........))))))))...)).............))))))))))...... (-14.55 = -15.66 + 1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:20 2011