| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,258,515 – 14,258,605 |
| Length | 90 |
| Max. P | 0.568227 |
| Location | 14,258,515 – 14,258,605 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.92 |
| Shannon entropy | 0.41543 |
| G+C content | 0.54117 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -16.77 |
| Energy contribution | -17.61 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14258515 90 + 24543557 -----AAUCCUUUGAGUGCAUCAAUCGCUCCGCCUACACCGGGGCACAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU -----.....((((.(((.((((...((((((.......))))))...........(((((((...))))))))))).))))))).......... ( -22.80, z-score = -0.95, R) >droAna3.scaffold_13337 18499426 90 - 23293914 -----AAUAUUCUCAGUGUCUGAGUUGCCACGCCCACGUCAGGGCACAUUUAUCACGCAUACGCAGCGUAUGCUGGUUAGCCAGUUUCGCUUCCC -----.........((((.(((.(((((((.((((......))))...........(((((((...)))))))))).)))))))...)))).... ( -28.40, z-score = -2.74, R) >droEre2.scaffold_4784 14249964 90 + 25762168 -----AAUCUGUUGAGUGCAUCAAUCGCUCCGCCUGCACCGGGGCACAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU -----((((((((((.....))))..((((((.......)))))).((...((((.(((((((...))))))))))).)).))))))........ ( -25.20, z-score = -0.67, R) >droYak2.chr3L 14356986 90 + 24197627 -----AAUCCGUUGAGUGCAUCAAUCGCUCCGCCUGCACCGGGGCACAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU -----.....((.(((((.......))))).)).......((((.......(((..(((((((...)))))))(((....))))))....)))). ( -24.30, z-score = -0.42, R) >droSec1.super_0 6405766 95 + 21120651 AAUCCUUUCCUUUGAGUGCAUCAAUCGCUCCGCCUACACCGGGGCCCAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU .............(((((.......)))))..........((((.......(((..(((((((...)))))))(((....))))))....)))). ( -22.60, z-score = -0.95, R) >droSim1.chr3L 13614825 95 + 22553184 AAUCCUUUCCUUUGAGUGCAUCAAUCGCUCCGCCUACACCGGGGCCCAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU .............(((((.......)))))..........((((.......(((..(((((((...)))))))(((....))))))....)))). ( -22.60, z-score = -0.95, R) >droGri2.scaffold_15110 21472971 75 + 24565398 ---------------GGGCGUAGGUUGCCACGCCCACGCU-GAGCACAUUUAUCACGCAUACGCAGCGUAUGCCG---UGCCACAAUGCUGCCC- ---------------((((((.((...)))))))).....-..(((((((...((((((((((...)))))).))---))....)))).)))..- ( -27.50, z-score = -1.00, R) >consensus _____AAUCCUUUGAGUGCAUCAAUCGCUCCGCCUACACCGGGGCACAUUUAUCACGCAUACGCAGCGUAUGCUGGUUUGCCAGAUUUUCCCCCU ...............(.(((......((((((.......))))))......((((.(((((((...))))))))))).))))............. (-16.77 = -17.61 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:27 2011