Locus 7356

Sequence ID	dm3.chr3L
Location	14,250,240 – 14,250,335
Length	95
Max. P	0.761653

overview

Window 2

Location	14,250,240 – 14,250,335
Length	95
Sequences	10
Columns	113
Reading direction	forward
Mean pairwise identity	84.29
Shannon entropy	0.31094
G+C content	0.37943
Mean single sequence MFE	-23.70
Consensus MFE	-16.83
Energy contribution	-16.97
Covariance contribution	0.14
Combinations/Pair	1.14
Mean z-score	-1.72
Structure conservation index	0.71
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.61
SVM RNA-class probability	0.761653
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14250240 95 + 24543557
-------UUUUUUAAUAAAACAUGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUU----CCCGA-------
-------..........((((..(((((............)))))))))..((...((((((.....))))))..))((.(((((........))))----)))..------- ( -20.90, z-score =  -1.33, R)
>droSim1.chr3L 13605114 95 + 22553184
------CUUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUU----CCCG--------
------...............(((((((............)))))))....((...((((((.....))))))..))((.(((((........))))----))).-------- ( -23.20, z-score =  -2.26, R)
>droSec1.super_0 6397277 95 + 21120651
------CUUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUU----CCCG--------
------...............(((((((............)))))))....((...((((((.....))))))..))((.(((((........))))----))).-------- ( -23.20, z-score =  -2.26, R)
>droYak2.chr3L 14348217 94 + 24197627
-------CUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUU----CCCA--------
-------..............(((((((............)))))))....((...((((((.....))))))..))((.(((((........))))----))).-------- ( -23.20, z-score =  -2.27, R)
>droAna3.scaffold_13337 18491900 103 - 23293914
UUCAUUUUUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCAGGCAUGAAAAAUUUUU----CUCAAA------
.......(((((((.......(((((((............)))))))...(((...((((((.....))))))..))).......))))))).....----......------ ( -19.70, z-score =  -1.05, R)
>dp4.chrXR_group6 6939058 107 + 13314419
------GGUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUUUGGCUUCAGCUACCAA
------.(((((....)))))(((((((............)))))))........((((.((((((((((.(((.((.....))))).))))))))))(((....))).)))) ( -26.70, z-score =  -1.49, R)
>droPer1.super_41 297045 107 + 728894
------GGUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUUUGGCUUCAGCUACCAA
------.(((((....)))))(((((((............)))))))........((((.((((((((((.(((.((.....))))).))))))))))(((....))).)))) ( -26.70, z-score =  -1.49, R)
>droWil1.scaffold_180949 3540707 84 + 6375548
-------GGUUUUAAUAAAACAAGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAGUGCAUAAGGGGUGAGGG----------------------
-------.((((.....))))..(((((............))))).((((((((((((((((.....)))))))).))).....)))))..---------------------- ( -15.30, z-score =   0.12, R)
>droVir3.scaffold_13049 3144820 98 - 25233164
------UUUUUUUAUGAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUGGCGGCGAGCAUGAAAAAUUGCU-GGCCCCG--------
------.....(((((.((((..(((((............))))))))).))))).((((((.....)))))).((.(((.((((........))))-.))))).-------- ( -29.80, z-score =  -2.67, R)
>droMoj3.scaffold_6680 8089266 98 - 24764193
------UUUUUUAAUAAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUGGCGGCGAGCAUGAAAAAUUGCU-GGCCCCG--------
------...............(((((((............))))))).........((((((.....)))))).((.(((.((((........))))-.))))).-------- ( -28.30, z-score =  -2.46, R)
>consensus
_______UUUUUUAAUAAAACACGCAGCAAUAAAAUUCCAGCUGUGUUUACGUGAUUGGAAAACGAUUUUCCAUAGCGGCGAGCAUGAAAAAUUGUU____CCCG________
........((((((.......(((((((............)))))))...(((...((((((.....))))))..))).......))))))...................... (-16.83 = -16.97 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:25:25 2011